SRR3553523_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553523_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	951877
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCCAAGCTGATCGTATGCCGTCTTCTGCT	3325	0.3493098373004075	Illumina Single End Adapter 1 (95% over 21bp)
ATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCATA	1090	0.11451059328043434	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	964	0.10127358891957679	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TACGTAG	30	2.1651067E-6	45.000004	1
AACGTCG	20	7.032676E-4	45.0	1
ATTGTCG	20	7.032676E-4	45.0	44
TAACGTC	25	3.890299E-5	45.0	32
ATATGCG	50	2.1827873E-11	45.0	1
TAACGCC	25	3.890299E-5	45.0	12
CATTACG	35	1.2116288E-7	45.0	1
CGTTACG	20	7.032676E-4	45.0	1
TGCGACG	35	1.2116288E-7	45.0	1
TCATACG	25	3.890299E-5	45.0	1
CGCGTAG	20	7.032676E-4	45.0	1
CGGTACG	20	7.032676E-4	45.0	6
CGTTTAG	45	3.8380676E-10	45.0	1
TGTCGAC	20	7.032676E-4	45.0	16
TCGAAAC	20	7.032676E-4	45.0	45
AGTCGTG	20	7.032676E-4	45.0	24
AATTGCG	85	0.0	42.352943	1
TCATGCG	70	0.0	41.785713	1
TAACGCG	65	0.0	41.538464	1
CGATAAG	60	3.6379788E-12	41.250004	1