SRR3553522_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553522_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	935337
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCCTGATACGTCGTATGCCGTCTTCTGCT	5620	0.600852954603528	No Hit
AATCTGTCTCTTATACACATCTGACGCCTGATACGTCGTATGCCGTCTTCT	5052	0.5401261791204668	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCCTGATACGTCGTATGCC	4591	0.4908391307090386	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCCTGATACGTCGTATGCCGT	4187	0.44764614251334006	No Hit
AATGACTGTCTCTTATACACATCTGACGCCTGATACGTCGTATGCCGTCTT	1189	0.12711995783337984	No Hit
CCTGTCTCTTATACACATCTGACGCCTGATACGTCGTATGCCGTCTTCTGC	1040	0.1111898706027881	No Hit
AACTGTCTCTTATACACATCTGACGCCTGATACGTCGTATGCCGTCTTCTG	1006	0.10755481714077386	No Hit
AATGATCTGTCTCTTATACACATCTGACGCCTGATACGTCGTATGCCGTCT	994	0.10627185709535707	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AACGTTG	25	3.8902468E-5	45.0	13
CTTCGAT	20	7.032613E-4	45.0	16
TCGTTCA	25	3.8902468E-5	45.0	16
CAACGCG	50	2.1827873E-11	45.0	1
CGACGGT	25	3.8902468E-5	45.0	28
AACCCGC	20	7.032613E-4	45.0	43
CGTGAAA	20	7.032613E-4	45.0	42
TTCCGCG	45	3.8380676E-10	45.0	1
CGATTAC	25	3.8902468E-5	45.0	19
TCGATGA	20	7.032613E-4	45.0	18
TCGATAG	20	7.032613E-4	45.0	1
CATTACG	25	3.8902468E-5	45.0	1
TATTGCG	25	3.8902468E-5	45.0	1
TCGCTAG	20	7.032613E-4	45.0	1
CGAATCG	25	3.8902468E-5	45.0	1
TCGTACG	25	3.8902468E-5	45.0	1
CTCGATG	25	3.8902468E-5	45.0	1
TATAGCG	45	3.8380676E-10	45.0	1
CGTAACG	85	0.0	45.0	1
ACGTACG	70	0.0	45.0	1