SRR3553520_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553520_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	805684
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCGGTAGGAATCGTATGCCGTCTTCTGCT	6449	0.8004378888000754	No Hit
AATCTGTCTCTTATACACATCTGACGCGGTAGGAATCGTATGCCGTCTTCT	2380	0.2954011746540827	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCGGTAGGAATCGTATGCC	1738	0.21571732838184696	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCGGTAGGAATCGTATGCCGT	1490	0.18493602951032911	No Hit
CCTGTCTCTTATACACATCTGACGCGGTAGGAATCGTATGCCGTCTTCTGC	1295	0.16073299209119207	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	891	0.11058926328436458	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCACGAA	25	3.8897637E-5	45.0	27
ATTTACG	20	7.0320297E-4	45.0	1
TTTAGCG	20	7.0320297E-4	45.0	1
ACCGGTC	25	3.8897637E-5	45.0	4
TCGCACG	20	7.0320297E-4	45.0	1
GGTAACG	25	3.8897637E-5	45.0	1
ATAGGCG	40	6.8102963E-9	45.0	1
CCTAGCG	35	1.2113196E-7	45.0	1
TTTCGCG	25	3.8897637E-5	45.0	1
TTAGACG	20	7.0320297E-4	45.0	1
GAGTACG	25	3.8897637E-5	45.0	1
CGCATAG	45	3.8380676E-10	45.0	1
TTCGTTA	25	3.8897637E-5	45.0	12
CGCGATG	20	7.0320297E-4	45.0	1
CGATTAG	20	7.0320297E-4	45.0	1
CGCGACG	35	1.2113196E-7	45.0	1
CCTCGCG	40	6.8102963E-9	45.0	1
CGTTACG	50	2.1827873E-11	45.0	1
CTACGCG	25	3.8897637E-5	45.0	1
CGCTAAG	20	7.0320297E-4	45.0	1