SRR3553516_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553516_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	866700
Sequences flagged as poor quality	0
Sequence length	51
%GC	50

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCCCCTCAAATCGTATGCCGTCTTCTGCT	5592	0.6452059536171686	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	1152	0.13291796469366562	No Hit
CCTGTCTCTTATACACATCTGACGCCCCTCAAATCGTATGCCGTCTTCTGC	998	0.11514941733010269	No Hit
AAACTGTCTCTTATACACATCTGACGCCCCTCAAATCGTATGCCGTCTTCT	940	0.10845736702434522	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	925	0.10672666435906311	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GATCTCG	30	2.1648812E-6	45.000004	9
ATGATCG	25	3.8900092E-5	45.0	15
GGTCGAT	20	7.0323265E-4	45.0	8
ACGCATC	25	3.8900092E-5	45.0	10
CTATCGT	20	7.0323265E-4	45.0	40
CATTGCG	25	3.8900092E-5	45.0	1
TAGCGGA	25	3.8900092E-5	45.0	3
CGATTAT	20	7.0323265E-4	45.0	33
TTATCGA	20	7.0323265E-4	45.0	37
TCGATAG	50	2.1827873E-11	45.0	1
CGTTAAG	20	7.0323265E-4	45.0	1
CTTATCG	20	7.0323265E-4	45.0	36
TACGAAT	75	0.0	45.0	11
AATTACG	55	1.8189894E-12	45.0	1
TTACGAA	20	7.0323265E-4	45.0	32
CTTTCGT	20	7.0323265E-4	45.0	45
TAGTGCG	20	7.0323265E-4	45.0	1
ACGAGTA	20	7.0323265E-4	45.0	33
TATCGTT	20	7.0323265E-4	45.0	41
TTCGACG	20	7.0323265E-4	45.0	27