SRR3553515_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553515_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	874255
Sequences flagged as poor quality	0
Sequence length	51
%GC	50

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCCCCTCAAATCGTATGCCGTCTTCTGCT	5560	0.6359700545035487	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	1195	0.1366878084769318	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1062	0.12147485573431092	No Hit
CCTGTCTCTTATACACATCTGACGCCCCTCAAATCGTATGCCGTCTTCTGC	987	0.11289612298471269	No Hit
AAACTGTCTCTTATACACATCTGACGCCCCTCAAATCGTATGCCGTCTTCT	956	0.10935024678154542	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TATAGCG	30	2.164903E-6	45.000004	1
GATACGA	25	3.890037E-5	45.0	31
CGTATAG	20	7.0323586E-4	45.0	1
CCGATCT	25	3.890037E-5	45.0	22
CGGTTTA	20	7.0323586E-4	45.0	32
CGTGACG	25	3.890037E-5	45.0	1
ATTCGTT	20	7.0323586E-4	45.0	26
GCGCATC	20	7.0323586E-4	45.0	22
TTCCCGA	20	7.0323586E-4	45.0	28
TGCGCTA	20	7.0323586E-4	45.0	26
CTACGTT	25	3.890037E-5	45.0	43
GTATGCG	25	3.890037E-5	45.0	1
TACGAAT	100	0.0	45.0	11
TCGCTAA	25	3.890037E-5	45.0	15
TCGTAGA	20	7.0323586E-4	45.0	36
CGTAATG	40	6.8121153E-9	45.0	1
CGTAACG	90	0.0	45.0	1
TAGTGCG	25	3.890037E-5	45.0	1
TAGCTCG	20	7.0323586E-4	45.0	30
TATCGGC	20	7.0323586E-4	45.0	27