SRR3553503_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553503_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	409456
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCGCACACTATCGTATGCCGTCTTCTGCT	4682	1.1434684068617873	Illumina PCR Primer Index 1 (95% over 21bp)
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1500	0.3663397288109101	No Hit
AAACTGTCTCTTATACACATCTGACGCGCACACTATCGTATGCCGTCTTCT	1120	0.27353366417881286	No Hit
AAAAACTGTCTCTTATACACATCTGACGCGCACACTATCGTATGCCGTCTT	1036	0.25301863936540187	No Hit
AATCTGTCTCTTATACACATCTGACGCGCACACTATCGTATGCCGTCTTCT	916	0.22371146106052908	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCGCACACTATCGTATGCC	882	0.21540776054081515	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCGCACACTATCGTATGCCGT	800	0.19538118869915203	No Hit
CCTGTCTCTTATACACATCTGACGCGCACACTATCGTATGCCGTCTTCTGC	697	0.17022586065413622	TruSeq Adapter, Index 13 (95% over 22bp)
AAAAAACTGTCTCTTATACACATCTGACGCGCACACTATCGTATGCCGTCT	587	0.1433609472080028	No Hit
GCTGCCGGGGTGAACAAAGTGTGCTCACTGGGTTTCTGGATTATTCCCATA	514	0.12553241373920518	No Hit
ACCTGTCTCTTATACACATCTGACGCGCACACTATCGTATGCCGTCTTCTG	477	0.11649603376186941	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGCGAT	20	7.02796E-4	45.000004	18
ATCCTAC	20	7.02796E-4	45.000004	34
GTCATAC	20	7.02796E-4	45.000004	8
TTCTACG	20	7.02796E-4	45.000004	35
CCTTATG	20	7.02796E-4	45.000004	10
GTCGCGG	20	7.02796E-4	45.000004	2
ACGTTTA	20	7.02796E-4	45.000004	29
CAAAACG	20	7.02796E-4	45.000004	1
CGTGCAA	20	7.02796E-4	45.000004	11
GTCCTAG	20	7.02796E-4	45.000004	27
TTAGACT	40	6.7957444E-9	45.000004	28
CGTTGGA	20	7.02796E-4	45.000004	29
GGCCGAT	40	6.7957444E-9	45.000004	8
TCTTACG	20	7.02796E-4	45.000004	1
CCAATCG	20	7.02796E-4	45.000004	30
CGACACT	20	7.02796E-4	45.000004	35
TCGATAG	20	7.02796E-4	45.000004	1
CCATGCG	20	7.02796E-4	45.000004	1
ACCTCGT	20	7.02796E-4	45.000004	4
CCCACGT	20	7.02796E-4	45.000004	22