SRR3553499_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553499_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1200292
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCGAGCTCCATCGTATGCCGTCTTCTGCT	7210	0.6006871661229101	No Hit
AATCTGTCTCTTATACACATCTGACGCGAGCTCCATCGTATGCCGTCTTCT	2542	0.2117817997620579	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCGAGCTCCATCGTATGCC	1654	0.13779980204816827	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCGAGCTCCATCGTATGCCGT	1579	0.13155132251152218	No Hit
CCTGTCTCTTATACACATCTGACGCGAGCTCCATCGTATGCCGTCTTCTGC	1425	0.11872111119627558	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACTATCG	20	7.033411E-4	45.000004	1
AGATCGT	20	7.033411E-4	45.000004	34
GTCGAAA	20	7.033411E-4	45.000004	17
CTATACG	45	3.8562575E-10	45.000004	1
GAATCGC	20	7.033411E-4	45.000004	9
TCTACCG	30	2.1655815E-6	45.000004	1
CGCTAGT	20	7.033411E-4	45.000004	39
TTGCGAG	40	6.8157533E-9	45.000004	1
TCCCGAA	20	7.033411E-4	45.000004	15
TATAGCG	40	6.8157533E-9	45.000004	1
CCGAACG	30	2.1655815E-6	45.000004	1
CACGTAG	20	7.033411E-4	45.000004	1
TATCGCG	20	7.033411E-4	45.000004	1
CGATACG	45	3.8562575E-10	45.000004	1
GCGTATG	30	2.1655815E-6	45.000004	1
TCGCGCG	40	6.8157533E-9	45.000004	1
GCCCGAC	20	7.033411E-4	45.000004	31
CGAAACG	75	0.0	45.0	1
GGCGTAA	25	3.89091E-5	45.0	20
CATACCG	75	0.0	45.0	1