SRR3553498_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553498_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1047742
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AATCTGTCTCTTATACACATCTGACGCACCATAGATCGTATGCCGTCTTCT	10373	0.9900338060324011	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCACCATAGATCGTATGCC	8039	0.7672690414243201	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCACCATAGATCGTATGCCGT	7329	0.6995042672719047	No Hit
CTGTCTCTTATACACATCTGACGCACCATAGATCGTATGCCGTCTTCTGCT	6915	0.6599907229069752	Illumina Single End Adapter 2 (95% over 22bp)
AACTGTCTCTTATACACATCTGACGCACCATAGATCGTATGCCGTCTTCTG	2461	0.23488606928041447	No Hit
AATGACTGTCTCTTATACACATCTGACGCACCATAGATCGTATGCCGTCTT	2136	0.203866982520506	No Hit
AATGATCTGTCTCTTATACACATCTGACGCACCATAGATCGTATGCCGTCT	2014	0.19222289456755576	No Hit
ATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCATA	1327	0.12665331732430313	No Hit
AATGCTGTCTCTTATACACATCTGACGCACCATAGATCGTATGCCGTCTTC	1287	0.12283558356923746	No Hit
CCTGTCTCTTATACACATCTGACGCACCATAGATCGTATGCCGTCTTCTGC	1261	0.12035405662844478	Illumina Single End Adapter 2 (95% over 21bp)
AATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCACCATAGATC	1059	0.10107450116536322	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTATAG	35	1.2117926E-7	45.000004	1
AATTGCG	70	0.0	45.000004	1
ATAGTCG	35	1.2117926E-7	45.000004	1
CGCTTAG	45	3.8562575E-10	45.000004	1
CGGCGAA	25	3.8905688E-5	45.0	30
CATATCG	20	7.033002E-4	45.0	19
TTTCGCG	25	3.8905688E-5	45.0	1
TCATCCG	25	3.8905688E-5	45.0	1
CGACTAG	40	6.8139343E-9	45.0	1
TAGTGCG	25	3.8905688E-5	45.0	1
CGGTAAG	20	7.033002E-4	45.0	1
CCTGCGA	20	7.033002E-4	45.0	1
TAGTCCG	25	3.8905688E-5	45.0	1
TGCGTAA	25	3.8905688E-5	45.0	29
AGATACG	55	1.8189894E-12	44.999996	1
ATATCCG	55	1.8189894E-12	44.999996	1
CGTAACG	95	0.0	42.63158	1
AAATCCG	60	3.6379788E-12	41.250004	1
TACCGCG	60	3.6379788E-12	41.250004	1
ACGATTG	55	6.184564E-11	40.90909	1