SRR3553497_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553497_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1058470
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AATCTGTCTCTTATACACATCTGACGCACCATAGATCGTATGCCGTCTTCT	10473	0.9894470320368078	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCACCATAGATCGTATGCC	7982	0.7541073436186194	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCACCATAGATCGTATGCCGT	7161	0.6765425567092124	No Hit
CTGTCTCTTATACACATCTGACGCACCATAGATCGTATGCCGTCTTCTGCT	7052	0.6662446739161243	Illumina Single End Adapter 2 (95% over 22bp)
AACTGTCTCTTATACACATCTGACGCACCATAGATCGTATGCCGTCTTCTG	2466	0.23297778869500316	No Hit
AATGACTGTCTCTTATACACATCTGACGCACCATAGATCGTATGCCGTCTT	2098	0.1982106247697148	No Hit
AATGATCTGTCTCTTATACACATCTGACGCACCATAGATCGTATGCCGTCT	2039	0.19263654142299735	No Hit
ATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCATA	1399	0.13217190850945232	No Hit
AATGCTGTCTCTTATACACATCTGACGCACCATAGATCGTATGCCGTCTTC	1240	0.11715022626999348	No Hit
CCTGTCTCTTATACACATCTGACGCACCATAGATCGTATGCCGTCTTCTGC	1228	0.1160165144028645	Illumina Single End Adapter 2 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACTATCG	20	7.033032E-4	45.000004	1
TCGCAAG	40	6.8139343E-9	45.000004	1
CGGTTCA	20	7.033032E-4	45.000004	11
ATTACCG	30	2.1653377E-6	45.000004	1
ATCACCG	20	7.033032E-4	45.000004	1
GTTACGT	20	7.033032E-4	45.000004	2
CTCGCAT	30	2.1653377E-6	45.000004	21
TAGTGCG	20	7.033032E-4	45.000004	1
CGTCATA	20	7.033032E-4	45.000004	43
ATACCCG	40	6.8139343E-9	45.000004	1
TGCGTAA	20	7.033032E-4	45.000004	29
ATCTCCG	35	1.2118107E-7	45.0	1
CGACGGT	35	1.2118107E-7	45.0	28
CGCGATG	50	2.1827873E-11	45.0	1
CGACACG	25	3.8905964E-5	45.0	1
TAACCCG	35	1.2118107E-7	45.0	1
CGCAACG	145	0.0	43.44828	1
CGCGACG	100	0.0	42.75	1
CCACGCG	85	0.0	42.352943	1
GTTACGG	150	0.0	42.0	2