##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3553496_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 179861 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.423532616854125 31.0 31.0 34.0 30.0 34.0 2 31.63605784466894 31.0 31.0 34.0 30.0 34.0 3 31.81531849594965 31.0 31.0 34.0 30.0 34.0 4 35.49304184898338 37.0 35.0 37.0 33.0 37.0 5 35.24398841327469 37.0 35.0 37.0 33.0 37.0 6 35.229315971778206 37.0 35.0 37.0 32.0 37.0 7 35.06500019459472 37.0 35.0 37.0 32.0 37.0 8 35.46455318273556 37.0 35.0 37.0 33.0 37.0 9 37.04330010396917 39.0 37.0 39.0 33.0 39.0 10 36.680208605534276 38.0 35.0 39.0 32.0 39.0 11 36.75989792117246 39.0 35.0 39.0 32.0 39.0 12 36.67579408543264 39.0 35.0 39.0 32.0 39.0 13 36.59272994145479 39.0 35.0 39.0 32.0 39.0 14 37.63159328592636 39.0 36.0 41.0 32.0 41.0 15 37.694363981074275 39.0 37.0 41.0 33.0 41.0 16 37.56373532894847 39.0 36.0 41.0 32.0 41.0 17 37.58031479865007 39.0 36.0 41.0 32.0 41.0 18 37.48469095579364 39.0 36.0 40.0 32.0 41.0 19 37.365476673653546 39.0 36.0 40.0 32.0 41.0 20 37.38588687931236 39.0 36.0 40.0 32.0 41.0 21 37.30550814239885 39.0 36.0 40.0 32.0 41.0 22 37.333290707824375 39.0 36.0 40.0 32.0 41.0 23 37.2047525589205 39.0 36.0 40.0 32.0 41.0 24 37.039113537676315 39.0 35.0 40.0 31.0 41.0 25 37.099643613679454 39.0 35.0 40.0 31.0 41.0 26 37.03199137111436 39.0 35.0 40.0 31.0 41.0 27 37.020499163242725 39.0 35.0 40.0 31.0 41.0 28 36.96384430198876 39.0 35.0 40.0 31.0 41.0 29 36.69570946453094 39.0 35.0 40.0 31.0 41.0 30 36.6594536892378 39.0 35.0 40.0 30.0 41.0 31 36.594848243921696 39.0 35.0 40.0 30.0 41.0 32 36.27386704177115 38.0 35.0 40.0 30.0 41.0 33 36.31251911198092 38.0 35.0 40.0 30.0 41.0 34 36.2328575955877 38.0 35.0 40.0 30.0 41.0 35 35.966529709053106 38.0 35.0 40.0 29.0 41.0 36 36.040025352911414 38.0 35.0 40.0 30.0 41.0 37 35.71805449763984 38.0 35.0 40.0 28.0 41.0 38 35.71079333485302 38.0 35.0 40.0 28.0 41.0 39 35.56880591123145 38.0 34.0 40.0 27.0 41.0 40 35.393359316360964 38.0 34.0 40.0 26.0 41.0 41 35.357514969893415 38.0 34.0 40.0 26.0 41.0 42 35.14686341118975 38.0 34.0 40.0 26.0 41.0 43 35.176069297957866 38.0 34.0 40.0 26.0 41.0 44 35.13128471430716 38.0 34.0 40.0 26.0 41.0 45 34.87580409316083 38.0 33.0 40.0 25.0 41.0 46 34.59174584818276 38.0 33.0 40.0 24.0 41.0 47 34.59307465209245 38.0 33.0 40.0 24.0 41.0 48 34.50254919076398 37.0 33.0 40.0 24.0 41.0 49 34.20699317806528 37.0 33.0 40.0 23.0 41.0 50 34.09157627278843 37.0 32.0 40.0 23.0 41.0 51 32.59405874536448 35.0 31.0 39.0 19.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 1.0 12 2.0 13 1.0 14 7.0 15 16.0 16 23.0 17 45.0 18 98.0 19 215.0 20 398.0 21 571.0 22 804.0 23 1008.0 24 1231.0 25 1450.0 26 1666.0 27 2070.0 28 2602.0 29 3312.0 30 4264.0 31 5514.0 32 7076.0 33 9222.0 34 12393.0 35 15641.0 36 18603.0 37 24886.0 38 34785.0 39 31947.0 40 9.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 16.591145384491355 37.23264076147692 20.623147875303708 25.553065978728018 2 17.272226886317767 40.02535291141493 21.09073117574127 21.61168902652604 3 18.98632833132252 33.223433651542024 24.781914923190687 23.008323093944767 4 21.74790532689132 31.76786518478158 19.938174479181146 26.546055009145952 5 16.05184003202473 38.55032497317373 18.830096574577034 26.567738420224508 6 20.358499063165443 36.52431599957745 22.655272682793935 20.46191225446317 7 70.59340268318313 10.778323260740239 10.248469651564264 8.379804404512374 8 73.0108250259923 6.66236705011092 7.971155503416528 12.35565242048026 9 65.7941410311296 11.528346890098465 15.926743429648452 6.75076864912349 10 25.022100399753143 40.26609437287683 15.477507630892745 19.23429759647728 11 18.994668104814274 25.888324873096447 35.624732432267145 19.492274589822138 12 20.98175813544904 22.31723386392826 38.60091959902369 18.100088401599013 13 23.355257671201652 25.722641373060306 30.363447328770548 20.55865362696749 14 14.894835456269007 28.361345705850628 36.517088195884604 20.226730641995765 15 12.929428836712795 31.147386036995233 32.60629041315238 23.31689471313959 16 16.238650958239976 29.61453566921122 29.533361873891508 24.613451498657295 17 15.447484446322438 29.595076197730467 32.21487704393949 22.742562312007607 18 15.879484713195188 26.874086099821533 29.838041598790177 27.408387588193108 19 16.054619956521982 33.72215210634879 33.3340746465326 16.889153290596628 20 17.91772535457937 31.770089124379382 28.984604778134226 21.327580742907024 21 16.30036528207894 31.740621924708524 28.10837257660082 23.85064021661172 22 14.87092810559265 29.58896036383652 28.625438533089444 26.914672997481386 23 19.9620818298575 27.708619433896175 24.61956733255125 27.709731403695077 24 14.709136499852665 33.78219847548941 25.74766069353556 25.76100433112237 25 19.298235859914044 27.545159873457838 26.935244438761043 26.221359827867076 26 20.25008200777267 29.72239673970455 25.262285876315598 24.76523537620718 27 15.296812538571453 27.287182880112976 29.325979506396603 28.090025074918966 28 25.99396200399197 25.465776349514346 26.913561027682487 21.626700618811192 29 20.404645809819804 30.05821161897243 23.797265666264504 25.73987690494326 30 26.15519762483251 25.072695025603103 24.58454028388589 24.187567065678497 31 28.889531360328252 27.507908885194677 18.440907144961944 25.16165260951513 32 22.552415476395662 28.121160229288172 24.255397223411414 25.071027070904755 33 29.38491390573832 23.544292537014694 24.61956733255125 22.451226224695738 34 25.38682649379243 24.984849411489986 22.859875125791586 26.768448968926005 35 26.450425606440533 22.204924914239328 28.692712705922908 22.651936773397235 36 27.521808507680934 21.90246912893846 30.87717737586247 19.698544987518137 37 24.180895246885097 27.60075836340285 25.625344015656538 22.59300237405552 38 29.34265905338011 24.636802864434202 28.22512940548535 17.79540867670034 39 27.64523715535886 23.43643146652137 26.101267089585846 22.817064288533924 40 29.64733877827878 23.9890804565748 24.256509193210313 22.107071571936107 41 24.32878723013883 19.475595042838638 32.39557213626078 23.800045590761755 42 27.079244527718625 22.782593224768018 28.090581059818415 22.04758118769494 43 20.47025202795492 20.41965740210496 31.99303906905888 27.117051500881235 44 24.437760270431056 19.861448563057028 28.28573175952541 27.415059406986508 45 28.44363147096925 22.81595231873502 27.294410683805825 21.446005526489902 46 21.155225424077482 22.408971372337525 34.385998076292246 22.049805127292743 47 24.977065622897683 22.49792895624955 26.14963777583801 26.375367645014762 48 23.121744013432597 19.130884405179554 35.78207615881153 21.96529542257632 49 23.747783010213443 17.978327708619435 32.16317044829062 26.1107188328765 50 21.65060796948755 18.337493953664218 27.43563084826616 32.576267228582076 51 21.079055492852813 16.469384691511777 36.36975219753032 26.081807618105092 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1536.0 1 1298.0 2 1060.0 3 731.0 4 402.0 5 356.0 6 310.0 7 310.5 8 311.0 9 343.5 10 376.0 11 454.5 12 533.0 13 512.5 14 492.0 15 504.5 16 517.0 17 632.0 18 747.0 19 754.5 20 762.0 21 865.5 22 969.0 23 1015.5 24 1062.0 25 953.5 26 1110.0 27 1375.0 28 1380.0 29 1385.0 30 2009.5 31 2634.0 32 3030.0 33 3426.0 34 3658.0 35 3890.0 36 4087.5 37 4285.0 38 4545.5 39 4806.0 40 5598.5 41 6391.0 42 6570.5 43 6750.0 44 8922.5 45 11095.0 46 15934.0 47 20773.0 48 21454.5 49 22136.0 50 23677.5 51 25219.0 52 21678.0 53 18137.0 54 14463.0 55 10789.0 56 9068.5 57 7348.0 58 6559.0 59 5770.0 60 4850.0 61 3930.0 62 3673.5 63 3417.0 64 2839.0 65 2261.0 66 1877.0 67 1493.0 68 1267.5 69 1042.0 70 843.5 71 645.0 72 554.5 73 464.0 74 331.0 75 163.5 76 129.0 77 90.5 78 52.0 79 42.5 80 33.0 81 29.0 82 25.0 83 16.5 84 8.0 85 8.0 86 8.0 87 13.0 88 18.0 89 10.0 90 2.0 91 2.0 92 2.0 93 2.5 94 3.0 95 1.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 179861.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 35.802647600091184 #Duplication Level Percentage of deduplicated Percentage of total 1 76.20312136035406 27.282735000917373 2 10.93407873282087 7.829379354056744 3 4.195977948598493 4.506813594942762 4 2.0048140383570154 2.871106020760476 5 1.2004037580557496 2.1488816363747563 6 0.7469524031368895 1.604572419813078 7 0.573025856044724 1.4361089952796882 8 0.34164143178818235 0.9785334230322305 9 0.29039521701995497 0.9357225857745702 >10 2.880658436213992 23.544848521914144 >50 0.532650050469757 12.458509626878534 >100 0.07919869555089681 5.549841266311207 >500 0.006211662396148769 1.2281706428853392 >1k 0.010870409193260346 7.624776911059096 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CTGTCTCTTATACACATCTGACGCGCTGAGGTTCGTATGCCGTCTTCTGCT 3954 2.198364292425818 Illumina Single End Adapter 1 (95% over 21bp) AATGATACGGCTGTCTCTTATACACATCTGACGCGCTGAGGTTCGTATGCC 2255 1.2537459482600453 No Hit AATGATACCTGTCTCTTATACACATCTGACGCGCTGAGGTTCGTATGCCGT 2032 1.129761315682666 No Hit AATCTGTCTCTTATACACATCTGACGCGCTGAGGTTCGTATGCCGTCTTCT 1915 1.0647110824470007 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1309 0.7277842333802214 No Hit AAACTGTCTCTTATACACATCTGACGCGCTGAGGTTCGTATGCCGTCTTCT 1216 0.6760776377313592 No Hit AAAAACTGTCTCTTATACACATCTGACGCGCTGAGGTTCGTATGCCGTCTT 1033 0.5743324011319852 No Hit AAAAAACTGTCTCTTATACACATCTGACGCGCTGAGGTTCGTATGCCGTCT 573 0.31857934738492505 No Hit AAGCGGGGGAGAGCTCTGGAGCCGCAGAGAGGACAGGCAGAATTTGAAACC 566 0.3146874530887741 No Hit CCTGTCTCTTATACACATCTGACGCGCTGAGGTTCGTATGCCGTCTTCTGC 565 0.31413146818932397 No Hit AATGACTGTCTCTTATACACATCTGACGCGCTGAGGTTCGTATGCCGTCTT 505 0.2807723742223161 No Hit AATGATCTGTCTCTTATACACATCTGACGCGCTGAGGTTCGTATGCCGTCT 417 0.23184570307070462 No Hit CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 400 0.22239395978005239 No Hit AACTGTCTCTTATACACATCTGACGCGCTGAGGTTCGTATGCCGTCTTCTG 400 0.22239395978005239 No Hit AATGATACGGCGACTGTCTCTTATACACATCTGACGCGCTGAGGTTCGTAT 376 0.20905032219324923 No Hit GAAAAACTGTCTCTTATACACATCTGACGCGCTGAGGTTCGTATGCCGTCT 352 0.1957066846064461 No Hit AATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGCTGAGGTTC 324 0.18013910742184241 No Hit AACCTGTCTCTTATACACATCTGACGCGCTGAGGTTCGTATGCCGTCTTCT 298 0.16568350003613902 No Hit ACCTGTCTCTTATACACATCTGACGCGCTGAGGTTCGTATGCCGTCTTCTG 288 0.16012365104163773 No Hit TACCTGTCTCTTATACACATCTGACGCGCTGAGGTTCGTATGCCGTCTTCT 267 0.14844796815318495 No Hit GAAAACTGTCTCTTATACACATCTGACGCGCTGAGGTTCGTATGCCGTCTT 267 0.14844796815318495 No Hit GCTGTCTCTTATACACATCTGACGCGCTGAGGTTCGTATGCCGTCTTCTGC 264 0.14678001345483455 No Hit TCTGTCTCTTATACACATCTGACGCGCTGAGGTTCGTATGCCGTCTTCTGC 252 0.14010819466143298 No Hit GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 249 0.1384402399630826 No Hit AGCCTGTCTCTTATACACATCTGACGCGCTGAGGTTCGTATGCCGTCTTCT 243 0.13510433056638183 No Hit ATTCCGGGGGGGTTGGGGATTTAGCTCAGTGGTAAAAGTGCTTGCCTAGCA 237 0.13176842116968102 No Hit TCGACAGGGATATCTGTTTCCCTTTCCTCCTGTGCTAGTAGAACAAACAAG 234 0.13010046647133064 No Hit CAAAAACTGTCTCTTATACACATCTGACGCGCTGAGGTTCGTATGCCGTCT 226 0.1256525872757296 No Hit GAACTGTCTCTTATACACATCTGACGCGCTGAGGTTCGTATGCCGTCTTCT 216 0.12009273828122828 No Hit TTCTGAGGGAACTTAATTTGTAGAAAACAATGGATTCAGTTAATATCATTT 212 0.11786879868342776 No Hit TAAAACTGTCTCTTATACACATCTGACGCGCTGAGGTTCGTATGCCGTCTT 191 0.10619311579497502 No Hit GAAACTGTCTCTTATACACATCTGACGCGCTGAGGTTCGTATGCCGTCTTC 189 0.10508114599607475 No Hit ATTTCAGGGATTATAGGATTTGTATTTTCTTCTCCTCCCCTCCTCTTCCTC 187 0.1039691761971745 No Hit TAACTGTCTCTTATACACATCTGACGCGCTGAGGTTCGTATGCCGTCTTCT 186 0.10341319129772435 No Hit TAAGATGGGATTGATACCACTGCAGAAATAAGCCAGCAACAACAGGGCAGC 185 0.10285720639827423 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 2.5202795492074435 0.0 2 0.0 0.0 0.0 3.3097781064266294 0.0 3 0.0 0.0 0.0 4.191014172055087 0.0 4 0.0 0.0 0.0 8.772329743524166 0.0 5 0.0 0.0 0.0 9.3449941899578 0.0 6 0.0 0.0 0.0 12.760965412179406 0.0 7 0.0 0.0 0.0 15.307376251661005 0.0 8 0.0 0.0 0.0 17.19994884938925 0.0 9 0.0 0.0 0.0 20.783827511244795 0.0 10 0.0 0.0 0.0 24.614563468456197 0.0 11 0.0 0.0 0.0 28.777222410639325 0.0 12 0.0 0.0 0.0 30.39013460394416 0.0 13 0.0 0.0 0.0 31.063988302077714 0.0 14 0.0 0.0 0.0 31.901301560649614 0.0 15 0.0 0.0 0.0 32.4745219919827 0.0 16 0.0 0.0 0.0 33.67489338989553 0.0 17 0.0 0.0 0.0 35.15325723753343 0.0 18 0.0 0.0 0.0 37.62627807028761 0.0 19 0.0 0.0 0.0 38.43190018959085 0.0 20 0.0 0.0 0.0 39.350387243482466 0.0 21 0.0 0.0 0.0 40.10652670673465 0.0 22 0.0 0.0 0.0 40.924936478725236 0.0 23 0.0 0.0 0.0 41.67996397217851 0.0 24 0.0 0.0 0.0 42.17979439678418 0.0 25 0.0 0.0 0.0 42.60901473915968 0.0 26 0.0 0.0 0.0 43.06992622080384 0.0 27 0.0 0.0 0.0 43.57364853970566 0.0 28 0.0 0.0 0.0 44.056243432428374 0.0 29 0.0 0.0 0.0 44.54495415904504 0.0 30 0.0 0.0 0.0 45.22825960046925 0.0 31 0.0 0.0 0.0 45.6580359277442 0.0 32 0.0 0.0 0.0 46.14563468456197 0.0 33 0.0 0.0 0.0 46.567071238345164 0.0 34 0.0 0.0 0.0 47.01575105220142 0.0 35 0.0 0.0 0.0 47.45609109256593 0.0 36 0.0 0.0 0.0 47.84806044667827 0.0 37 0.0 0.0 0.0 48.24002980079061 0.0 38 0.0 0.0 0.0 48.62866324550625 0.0 39 0.0 0.0 0.0 49.065111391574604 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TGATCCG 30 2.1552642E-6 45.000004 3 TCGTTTG 30 2.1552642E-6 45.000004 21 ACTGCGG 30 2.1552642E-6 45.000004 2 CTCGTTT 30 2.1552642E-6 45.000004 20 CCCTCCA 30 2.1552642E-6 45.000004 34 ACGTTAC 30 2.1552642E-6 45.000004 10 CAGTTTA 30 2.1552642E-6 45.000004 42 ACACCGG 30 2.1552642E-6 45.000004 2 TTGCTCA 30 2.1552642E-6 45.000004 10 CTATATT 30 2.1552642E-6 45.000004 40 GGCAATT 30 2.1552642E-6 45.000004 8 CACGCTT 30 2.1552642E-6 45.000004 1 GATCAAC 30 2.1552642E-6 45.000004 9 AATATGG 30 2.1552642E-6 45.000004 2 CGTTACT 30 2.1552642E-6 45.000004 11 GCATTAG 30 2.1552642E-6 45.000004 1 GGGACGC 30 2.1552642E-6 45.000004 7 GGAACTT 30 2.1552642E-6 45.000004 8 AAACCGG 65 0.0 45.000004 2 AGTTAAG 30 2.1552642E-6 45.000004 1 >>END_MODULE