SRR3553486_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553486_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	726793
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCGGCAGACTTCGTATGCCGTCTTCTGCT	2688	0.36984395832100747	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCGGCAGACTTCGTATGCC	952	0.13098640190535682	No Hit
AATCTGTCTCTTATACACATCTGACGCGGCAGACTTCGTATGCCGTCTTCT	934	0.1285097682558858	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCGGCAGACTTCGTATGCCGT	818	0.11254924029262803	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGAACCG	25	3.8893842E-5	45.000004	1
CCGATAG	25	3.8893842E-5	45.000004	1
CGCGACG	40	6.8084773E-9	45.000004	1
CCGCTAG	25	3.8893842E-5	45.000004	1
ATCACCG	40	6.8084773E-9	45.000004	1
GCCGCGA	40	6.8084773E-9	45.000004	15
ATCCGCG	25	3.8893842E-5	45.000004	1
GTTACCG	20	7.0315716E-4	45.000004	30
TCTACGT	20	7.0315716E-4	45.000004	33
CGAGCAA	20	7.0315716E-4	45.000004	38
CGTCGTA	20	7.0315716E-4	45.000004	45
CATAACG	25	3.8893842E-5	45.000004	1
TAGGCGA	20	7.0315716E-4	45.000004	14
CGCGTTG	20	7.0315716E-4	45.000004	1
GCTCGAT	20	7.0315716E-4	45.000004	31
TAGTCCG	40	6.8084773E-9	45.000004	1
TCGCGCG	20	7.0315716E-4	45.000004	1
ACGACCG	20	7.0315716E-4	45.000004	1
GTACGAA	25	3.8893842E-5	45.000004	9
TAACGCG	35	1.2111013E-7	45.0	1