SRR3553483_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553483_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1184542
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCACAATCCCTCGTATGCCGTCTTCTGCT	7346	0.6201553005296562	TruSeq Adapter, Index 13 (95% over 22bp)
AATCTGTCTCTTATACACATCTGACGCACAATCCCTCGTATGCCGTCTTCT	2259	0.19070661909835193	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCACAATCCCTCGTATGCC	1517	0.12806637502089413	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCACAATCCCTCGTATGCCGT	1509	0.12739100850792964	No Hit
CCTGTCTCTTATACACATCTGACGCACAATCCCTCGTATGCCGTCTTCTGC	1460	0.12325438861602205	TruSeq Adapter, Index 19 (95% over 21bp)
ATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCATA	1333	0.11253294522271055	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGAACCG	60	0.0	45.000004	1
CGAAACG	30	2.1655578E-6	45.000004	1
CGCTCGC	30	2.1655578E-6	45.000004	45
CCGAACG	30	2.1655578E-6	45.000004	1
ATACCCG	30	2.1655578E-6	45.000004	1
TAATACG	55	1.8189894E-12	45.0	1
TCGCACG	55	1.8189894E-12	45.0	1
TCCGCGC	20	7.033375E-4	45.0	26
CCGGATA	20	7.033375E-4	45.0	5
CCGCTAA	25	3.890878E-5	45.0	32
TACGCCC	20	7.033375E-4	45.0	4
GTTAACG	20	7.033375E-4	45.0	1
CGGATAT	20	7.033375E-4	45.0	6
TTAAGCG	25	3.890878E-5	45.0	1
ACGCTAG	35	1.2119744E-7	45.0	1
CTCGAGT	20	7.033375E-4	45.0	44
TTCGAGT	20	7.033375E-4	45.0	13
GCGTAAG	20	7.033375E-4	45.0	1
TGGTACG	20	7.033375E-4	45.0	11
CGTAACG	115	0.0	44.999996	1