SRR3553479_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553479_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	980388
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTCTTCTGCT	6438	0.6566787843180455	TruSeq Adapter, Index 21 (95% over 22bp)
AATCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTCTTCT	6327	0.645356736312562	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCC	5163	0.5266282329037075	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGT	5023	0.5123481723562507	No Hit
AATGACTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTCTT	1527	0.1557546603997601	No Hit
AACTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTCTTCTG	1325	0.1351505730384297	TruSeq Adapter, Index 15 (95% over 21bp)
AATGATCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTCT	1283	0.1308665548741927	No Hit
CCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTCTTCTGC	1210	0.1234205233030188	TruSeq Adapter, Index 15 (95% over 22bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AACGTCA	30	2.165174E-6	45.000004	41
CGGGTCG	30	2.165174E-6	45.000004	6
TTTCGCG	30	2.165174E-6	45.000004	1
TAACCCG	30	2.165174E-6	45.000004	1
CATCGCG	35	1.2116834E-7	45.000004	1
CAATGCG	35	1.2116834E-7	45.000004	1
TATAACG	30	2.165174E-6	45.000004	1
TTCGACG	30	2.165174E-6	45.000004	1
AGATCGT	25	3.8903854E-5	45.0	23
GTCGACA	25	3.8903854E-5	45.0	24
CCGATAG	20	7.032778E-4	45.0	1
CCTAGCG	45	3.8380676E-10	45.0	1
CCGGCTA	20	7.032778E-4	45.0	33
GACGTAA	25	3.8903854E-5	45.0	22
GAGTACG	40	6.8139343E-9	45.0	1
CCGGACG	50	2.1827873E-11	45.0	1
CCGTATC	25	3.8903854E-5	45.0	43
GCCGATT	20	7.032778E-4	45.0	14
CGCTATG	20	7.032778E-4	45.0	1
CTACGCG	55	1.8189894E-12	45.0	1