SRR3553476_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553476_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	487753
Sequences flagged as poor quality	0
Sequence length	51
%GC	51

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCTGGTGGCTTCGTATGCCGTCTTCTGCT	2401	0.49225735156933936	No Hit
AATCTGTCTCTTATACACATCTGACGCTGGTGGCTTCGTATGCCGTCTTCT	880	0.1804191875805992	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCTGGTGGCTTCGTATGCC	861	0.1765237733032908	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCTGGTGGCTTCGTATGCCGT	810	0.1660676612957788	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	628	0.1287536929552458	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GGTCGAC	35	1.21001E-7	45.000004	21
AAACGCG	35	1.21001E-7	45.000004	1
CTAACGG	115	0.0	45.000004	2
TCGACGG	35	1.21001E-7	45.000004	2
TCACGAC	25	3.887493E-5	45.0	25
GGTACTC	20	7.02929E-4	45.0	8
TTAATCG	90	0.0	45.0	20
CTATACG	20	7.02929E-4	45.0	1
ATTACGG	20	7.02929E-4	45.0	2
TAAACGC	25	3.887493E-5	45.0	40
GCGTTAC	25	3.887493E-5	45.0	17
ATCGTTA	20	7.02929E-4	45.0	34
CGTTACG	20	7.02929E-4	45.0	1
GCATTAC	20	7.02929E-4	45.0	14
ATATACG	25	3.887493E-5	45.0	1
TACGACG	20	7.02929E-4	45.0	1
TATTCGC	25	3.887493E-5	45.0	44
ACGTGCA	25	3.887493E-5	45.0	34
TCATGCG	20	7.02929E-4	45.0	1
ATCCACG	20	7.02929E-4	45.0	1