SRR3553473_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553473_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	885032
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCGTCTTCTGCT	5944	0.6716141337262381	No Hit
AATCTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCGTCTTCT	1756	0.1984109049164324	No Hit
CCTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCGTCTTCTGC	1307	0.14767827603973643	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCC	1294	0.14620940259787218	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCGT	1198	0.13536233718102847	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1042	0.11773585587865751	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTTCGCG	20	7.032405E-4	45.000004	1
GTCGAGA	20	7.032405E-4	45.000004	8
CGACGAA	20	7.032405E-4	45.000004	7
GACCGTA	20	7.032405E-4	45.000004	22
TTGTCGA	20	7.032405E-4	45.000004	29
CGACACG	20	7.032405E-4	45.000004	1
CCGCTCA	20	7.032405E-4	45.000004	14
CCCGTAA	20	7.032405E-4	45.000004	38
TCGTCGA	20	7.032405E-4	45.000004	41
AGCGACG	35	1.2115015E-7	45.000004	1
TCCCGTA	20	7.032405E-4	45.000004	37
CGTGTAA	20	7.032405E-4	45.000004	16
TATAGCG	35	1.2115015E-7	45.000004	1
CGTCGGT	20	7.032405E-4	45.000004	18
CGTCGAA	20	7.032405E-4	45.000004	42
AACTCGC	20	7.032405E-4	45.000004	41
CGGTCGA	20	7.032405E-4	45.000004	6
ACCAACG	40	6.8121153E-9	45.000004	1
GCGTGAT	20	7.032405E-4	45.000004	9
CCGCGAA	20	7.032405E-4	45.000004	3