SRR3553469_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553469_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1238435
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AATCTGTCTCTTATACACATCTGACGCTATAGGACTCGTATGCCGTCTTCT	8540	0.6895799941054637	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCTATAGGACTCGTATGCC	7810	0.6306346316116712	No Hit
CTGTCTCTTATACACATCTGACGCTATAGGACTCGTATGCCGTCTTCTGCT	7135	0.5761303580728904	TruSeq Adapter, Index 21 (95% over 23bp)
AATGATACCTGTCTCTTATACACATCTGACGCTATAGGACTCGTATGCCGT	7057	0.5698320864639647	No Hit
AATGACTGTCTCTTATACACATCTGACGCTATAGGACTCGTATGCCGTCTT	2074	0.16746942713989835	No Hit
AATGATCTGTCTCTTATACACATCTGACGCTATAGGACTCGTATGCCGTCT	1808	0.14599070601202324	No Hit
AACTGTCTCTTATACACATCTGACGCTATAGGACTCGTATGCCGTCTTCTG	1685	0.13605881616717874	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	1522	0.12289704344596204	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1280	0.10335625204391026	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TAATACG	30	2.1656379E-6	45.000004	1
ATAGCCG	30	2.1656379E-6	45.000004	1
TCTAGCG	35	1.212029E-7	45.000004	1
CATACCG	30	2.1656379E-6	45.000004	1
ACGCGAA	25	3.890982E-5	45.0	1
TAGCGTT	20	7.033499E-4	45.0	41
CGCGAAA	25	3.890982E-5	45.0	2
CCGTAAC	20	7.033499E-4	45.0	42
TTGCGAA	20	7.033499E-4	45.0	1
CGAATCG	20	7.033499E-4	45.0	1
GCGATAG	20	7.033499E-4	45.0	1
GTATACG	40	6.8157533E-9	45.0	1
TTACGAG	20	7.033499E-4	45.0	1
ATCGCGT	20	7.033499E-4	45.0	20
TAAACGG	165	0.0	43.636364	2
TATACCG	55	6.184564E-11	40.909092	1
TATACGG	160	0.0	40.78125	2
TCACGCG	50	1.0822987E-9	40.5	1
AAACTCG	45	1.9284926E-8	40.000004	1
TTACGCA	40	3.4585173E-7	39.375	9