SRR3553468_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553468_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	769470
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCCGTCTTCTGCT	5047	0.6559060132298855	Illumina Single End Adapter 1 (95% over 21bp)
AATCTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCCGTCTTCT	1190	0.15465190325808673	No Hit
CCTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCCGTCTTCTGC	1042	0.13541788503775326	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	879	0.11423447307887247	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCC	833	0.10825633228066071	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCCGT	826	0.10734661520267197	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTATCCG	55	1.8189894E-12	45.000004	1
TCTACGG	110	0.0	45.000004	2
GTCGCAC	20	7.0318324E-4	45.0	10
CTCGTAC	20	7.0318324E-4	45.0	31
CGAGTAG	25	3.8896E-5	45.0	1
ACGCACG	50	2.1827873E-11	45.0	1
TTGCTCG	20	7.0318324E-4	45.0	1
CGCGAAG	45	3.8380676E-10	45.0	1
CGTTCCG	20	7.0318324E-4	45.0	1
TCTAGCG	40	6.8102963E-9	45.0	1
CCTCGCG	20	7.0318324E-4	45.0	1
TCGCTAG	20	7.0318324E-4	45.0	1
TTACGAG	50	2.1827873E-11	45.0	1
TTACCGG	85	0.0	45.0	2
TCGACTA	20	7.0318324E-4	45.0	38
GCGTACG	25	3.8896E-5	45.0	1
ACGACCG	25	3.8896E-5	45.0	1
GTTGCGA	20	7.0318324E-4	45.0	31
TACCGGA	20	7.0318324E-4	45.0	3
CTTACCG	25	3.8896E-5	45.0	1