SRR3553467_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553467_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	774940
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCCGTCTTCTGCT	5107	0.659018762742922	Illumina Single End Adapter 1 (95% over 21bp)
AATCTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCCGTCTTCT	1260	0.16259323302449222	No Hit
CCTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCCGTCTTCTGC	969	0.12504193873074046	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	865	0.11162154489379823	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCC	865	0.11162154489379823	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCCGT	819	0.10568560146591993	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TATCACG	35	1.2112469E-7	45.000004	1
ACCGGTA	20	7.031861E-4	45.000004	4
CTATCCG	70	0.0	45.000004	1
CGGTTTA	20	7.031861E-4	45.000004	19
GCTATCG	20	7.031861E-4	45.000004	1
CGGATAA	20	7.031861E-4	45.000004	36
TCGCTAA	20	7.031861E-4	45.000004	30
ACGGACG	30	2.1645828E-6	45.000004	1
CTTGACG	20	7.031861E-4	45.000004	1
GATATCG	30	2.1645828E-6	45.000004	9
AGCGATC	20	7.031861E-4	45.000004	6
CAGTACG	35	1.2112469E-7	45.000004	1
CGGTAAA	60	0.0	45.000004	15
ATCGCTA	20	7.031861E-4	45.000004	29
GCGTACT	20	7.031861E-4	45.000004	27
TACACCG	20	7.031861E-4	45.000004	1
GTTATCG	20	7.031861E-4	45.000004	18
TACGTAC	20	7.031861E-4	45.000004	33
CGCTTCG	20	7.031861E-4	45.000004	1
TAATCCG	20	7.031861E-4	45.000004	1