SRR3553464_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553464_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	675952
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	20176	2.984827325017161	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	4706	0.6962032807063223	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3910	0.5784434397708713	No Hit
CTGTCTCTTATACACATCTGACGCAGTTCGCTTCGTATGCCGTCTTCTGCT	2616	0.38700972850143206	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2131	0.315259071650058	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCAGTTCGCTTCGTATGCCGT	933	0.13802755225223093	No Hit
TGAGAAGGGAAAAGCCAGCCCTTTGTATAGAAATTTTGCTTTTGTTTTTTT	926	0.13699197576159253	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCAGTTCGCTTCGTATGCC	789	0.11672426444481265	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGCGAG	45	3.8380676E-10	45.0	1
TCACGCG	35	1.2109376E-7	45.0	1
AACCGGT	20	7.0312223E-4	45.0	44
ACTATCG	25	3.8890947E-5	45.0	39
GATACGC	35	1.2109376E-7	45.0	15
GTCGCGG	20	7.0312223E-4	45.0	2
TCGTTAC	35	1.2109376E-7	45.0	30
AGATCGT	40	6.8084773E-9	45.0	34
CTACTCG	20	7.0312223E-4	45.0	1
TTTACGA	20	7.0312223E-4	45.0	23
CGAAAGC	20	7.0312223E-4	45.0	26
ACTGACG	55	1.8189894E-12	45.0	1
ACGTTAG	20	7.0312223E-4	45.0	31
CTATCCG	45	3.8380676E-10	45.0	1
AACCCGT	25	3.8890947E-5	45.0	10
CGGCCGT	20	7.0312223E-4	45.0	41
GCGCGCC	45	3.8380676E-10	45.0	16
CCGGCAT	20	7.0312223E-4	45.0	29
CATGACG	25	3.8890947E-5	45.0	1
GACGTCA	20	7.0312223E-4	45.0	13