SRR3553458_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553458_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1650570
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	19628	1.1891649551367103	No Hit
CTGTCTCTTATACACATCTGACGCCTGACCTTTCGTATGCCGTCTTCTGCT	5588	0.33854971312940374	TruSeq Adapter, Index 16 (95% over 23bp)
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	4468	0.27069436618865	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3509	0.21259322537062952	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2302	0.13946697201572789	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	1705	0.10329764869105824	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1689	0.10232828659190463	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGTTGC	20	7.0341805E-4	45.000004	35
ATAGCGC	20	7.0341805E-4	45.000004	21
TTCGTTC	20	7.0341805E-4	45.000004	32
ATTCGTT	20	7.0341805E-4	45.000004	23
ATTCGAT	20	7.0341805E-4	45.000004	42
TCGATAT	20	7.0341805E-4	45.000004	40
TATTACG	40	6.8175723E-9	45.000004	1
GTATCGA	20	7.0341805E-4	45.000004	9
CGCAATA	40	6.8175723E-9	45.000004	20
ATACGAT	20	7.0341805E-4	45.000004	34
GCGTAAT	20	7.0341805E-4	45.000004	1
TGCGTAA	20	7.0341805E-4	45.000004	15
TATCCGT	20	7.0341805E-4	45.000004	40
AACCGAT	45	3.8562575E-10	45.0	44
GTCGAAA	35	1.2123564E-7	45.0	13
ACGCATA	50	2.1827873E-11	45.0	1
GCGAAGT	25	3.891548E-5	45.0	10
CGCATAT	55	1.8189894E-12	45.0	2
TAGCGAA	25	3.891548E-5	45.0	39
CGCTATA	35	1.2123564E-7	45.0	30