SRR3553457_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553457_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1632522
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	19494	1.1941033566469548	No Hit
CTGTCTCTTATACACATCTGACGCCTGACCTTTCGTATGCCGTCTTCTGCT	5162	0.3161978827850406	TruSeq Adapter, Index 16 (95% over 23bp)
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	4251	0.2603946531807841	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3441	0.21077817021761422	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2402	0.14713431120683212	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	1722	0.10548096748466483	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTCGATC	20	7.034158E-4	45.000004	27
CGTATAC	20	7.034158E-4	45.000004	22
ATTCGGA	20	7.034158E-4	45.000004	27
TCGCTAT	20	7.034158E-4	45.000004	15
GCGATAT	20	7.034158E-4	45.000004	22
ACGTAAG	40	6.8175723E-9	45.000004	1
TATCGGC	40	6.8175723E-9	45.000004	40
ATCGCAT	20	7.034158E-4	45.000004	43
AATCGTC	20	7.034158E-4	45.000004	18
AGTCGAT	20	7.034158E-4	45.000004	36
ACGCATA	25	3.891529E-5	45.0	1
TGGACGT	25	3.891529E-5	45.0	17
CGCATAT	25	3.891529E-5	45.0	2
ATAGCGC	35	1.2123564E-7	45.0	21
CGCGCAT	25	3.891529E-5	45.0	12
CGTTCGA	25	3.891529E-5	45.0	19
GTTAACG	35	1.2123564E-7	45.0	1
ACTACGT	25	3.891529E-5	45.0	30
ACTCGGT	25	3.891529E-5	45.0	20
ACGTCGA	25	3.891529E-5	45.0	35