SRR3553456_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553456_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	852851
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AATGATACCTGTCTCTTATACACATCTGACGCACGCTGAATCGTATGCCGT	13521	1.5853883034668423	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCACGCTGAATCGTATGCC	12827	1.5040141830167286	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	10299	1.2075966376307232	No Hit
AATCTGTCTCTTATACACATCTGACGCACGCTGAATCGTATGCCGTCTTCT	9706	1.1380651485429458	No Hit
CTGTCTCTTATACACATCTGACGCACGCTGAATCGTATGCCGTCTTCTGCT	3010	0.352933865352799	No Hit
AATGACTGTCTCTTATACACATCTGACGCACGCTGAATCGTATGCCGTCTT	2878	0.3374563669386563	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2297	0.2693319231612556	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2221	0.2604206361955371	No Hit
AATGATCTGTCTCTTATACACATCTGACGCACGCTGAATCGTATGCCGTCT	2175	0.25502696250576007	No Hit
AATGATACGGCGACTGTCTCTTATACACATCTGACGCACGCTGAATCGTAT	2003	0.23485931305702873	No Hit
AACTGTCTCTTATACACATCTGACGCACGCTGAATCGTATGCCGTCTTCTG	1997	0.23415579040184042	No Hit
AATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCACGCTGAATC	1326	0.1554785067966151	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1118	0.13108972141675393	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	930	0.10904601155418707	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGTTTG	35	1.2114288E-7	45.0	41
CTCGTAC	35	1.2114288E-7	45.0	29
CGAGTTA	20	7.032262E-4	45.0	28
GATCGGT	35	1.2114288E-7	45.0	27
ACGTTAC	20	7.032262E-4	45.0	38
TAGACCG	20	7.032262E-4	45.0	1
TTAGATC	20	7.032262E-4	45.0	17
TAGAACG	20	7.032262E-4	45.0	1
TAGCGAG	20	7.032262E-4	45.0	1
ATAGCGG	45	3.8380676E-10	45.0	2
TTCGTGG	20	7.032262E-4	45.0	41
ATATGCG	20	7.032262E-4	45.0	1
GCGTTAG	25	3.889956E-5	45.0	1
GTAATCG	20	7.032262E-4	45.0	9
CGTTACT	20	7.032262E-4	45.0	39
GCCGATT	20	7.032262E-4	45.0	39
ACGATAG	25	3.889956E-5	45.0	1
ACCTACG	25	3.889956E-5	45.0	1
TCTCGAC	35	1.2114288E-7	45.0	43
TCGTCGT	25	3.889956E-5	45.0	14