##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3553456_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 852851 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.32216412949038 31.0 31.0 34.0 30.0 34.0 2 31.60718929801337 31.0 31.0 34.0 30.0 34.0 3 31.790718425610102 31.0 31.0 34.0 30.0 34.0 4 35.54804414839169 37.0 35.0 37.0 33.0 37.0 5 35.316561744079564 37.0 35.0 37.0 33.0 37.0 6 34.03865270721381 37.0 35.0 37.0 32.0 37.0 7 34.70443606210229 37.0 35.0 37.0 32.0 37.0 8 35.407332582127474 37.0 35.0 37.0 32.0 37.0 9 37.12289016487053 39.0 37.0 39.0 34.0 39.0 10 36.52359204597286 38.0 35.0 39.0 32.0 39.0 11 36.59192871908458 38.0 35.0 39.0 32.0 39.0 12 36.44220971775844 38.0 35.0 39.0 32.0 39.0 13 36.47815620782528 38.0 35.0 39.0 32.0 39.0 14 37.593179816873054 39.0 36.0 41.0 32.0 41.0 15 37.638776292693564 39.0 36.0 41.0 33.0 41.0 16 37.435692752895875 39.0 36.0 41.0 32.0 41.0 17 37.44277253588259 39.0 36.0 41.0 32.0 41.0 18 37.24672422263678 39.0 36.0 41.0 32.0 41.0 19 37.20234953116078 39.0 36.0 41.0 31.0 41.0 20 37.21727945444163 39.0 35.0 40.0 32.0 41.0 21 37.263559519775434 39.0 36.0 40.0 32.0 41.0 22 37.14143736713682 39.0 35.0 40.0 31.0 41.0 23 37.002780087025755 39.0 35.0 40.0 31.0 41.0 24 36.88749382952005 39.0 35.0 40.0 31.0 41.0 25 36.92025453449665 39.0 35.0 40.0 31.0 41.0 26 36.80700497507771 39.0 35.0 40.0 31.0 41.0 27 36.79462766649743 39.0 35.0 40.0 31.0 41.0 28 36.657474752330714 39.0 35.0 40.0 30.0 41.0 29 36.525631089135146 39.0 35.0 40.0 30.0 41.0 30 36.59891704412611 39.0 35.0 40.0 30.0 41.0 31 36.454959893345965 39.0 35.0 40.0 30.0 41.0 32 36.36540966710481 39.0 35.0 40.0 30.0 41.0 33 36.2674195140769 39.0 35.0 40.0 30.0 41.0 34 36.136099975259455 38.0 35.0 40.0 30.0 41.0 35 36.03319219887178 38.0 35.0 40.0 29.0 41.0 36 36.034954523123034 38.0 35.0 40.0 30.0 41.0 37 35.90959147611951 38.0 35.0 40.0 29.0 41.0 38 35.85788607857644 38.0 35.0 40.0 29.0 41.0 39 35.680307580104845 38.0 35.0 40.0 28.0 41.0 40 35.50000762149543 38.0 34.0 40.0 27.0 41.0 41 35.410001278066154 38.0 34.0 40.0 27.0 41.0 42 35.34491253454589 38.0 34.0 40.0 27.0 41.0 43 35.37076699212406 38.0 34.0 40.0 27.0 41.0 44 35.21523572112831 38.0 34.0 40.0 26.0 41.0 45 35.040864113426615 38.0 34.0 40.0 26.0 41.0 46 34.75768451933573 37.0 33.0 40.0 25.0 41.0 47 34.72299147213288 37.0 33.0 40.0 25.0 41.0 48 34.54934332022827 37.0 33.0 40.0 24.0 41.0 49 34.410029418972364 37.0 33.0 40.0 24.0 41.0 50 34.328644745682425 37.0 33.0 40.0 24.0 41.0 51 32.91730677457141 35.0 31.0 39.0 20.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 6.0 9 14.0 10 21.0 11 24.0 12 20.0 13 27.0 14 44.0 15 74.0 16 120.0 17 234.0 18 520.0 19 986.0 20 1876.0 21 3161.0 22 4289.0 23 5393.0 24 6239.0 25 7008.0 26 8101.0 27 9736.0 28 12107.0 29 15600.0 30 20077.0 31 26559.0 32 33982.0 33 44293.0 34 61585.0 35 76722.0 36 85597.0 37 113743.0 38 156727.0 39 157945.0 40 20.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 20.944103952507533 37.774476432577316 18.75134109006145 22.530078524853696 2 22.06059440629137 36.296961602906016 18.125205926943863 23.517238063858752 3 19.7950169490333 28.39569866248618 27.107665934612257 24.70161845386826 4 24.84478531419908 31.57925593098912 17.959760849198748 25.616197905613053 5 16.729885994153726 39.12195682481465 17.43446393332481 26.71369324770681 6 17.92200513337031 39.06426796708921 22.43123359179974 20.582493307740744 7 78.22738086723237 12.652620446009912 5.3173414816890645 3.8026572050686465 8 79.6536557968508 6.186191960846619 4.171185822611453 9.98896641969113 9 77.05191176418859 10.12791214409082 7.038861418934843 5.781314672785751 10 35.02534440365316 36.94408519190339 13.818943754536257 14.211626649907194 11 24.372369851240133 27.316377655651458 26.973879376350617 21.337373116757792 12 25.685260379597374 23.979921463420926 32.57802359380478 17.75679456317692 13 24.680864535540206 27.613615977468513 26.515065351391982 21.190454135599303 14 19.770628163653438 26.85345974853755 30.732097400366538 22.64381468744247 15 18.29147178112003 31.259856645533628 25.66626526790729 24.78240630543905 16 20.204701641904624 31.469037381676284 28.118862497669582 20.20739847874951 17 20.138218750989328 29.46528760592413 26.859908706210113 23.53658493687643 18 20.102808110678183 29.961388331607747 25.730872098408746 24.204931459305318 19 21.504928762468474 30.451860876049864 29.185637350486783 18.857573010994884 20 22.112537828999436 33.50397666180845 25.25939466565672 19.124090843535388 21 22.260629347916577 26.50310546625378 29.128417507864796 22.107847677964852 22 22.599610013941472 30.173031397043566 26.253003162334338 20.974355426680628 23 22.143961840931183 29.840265181139497 25.044116733169098 22.971656244760222 24 19.34980436207497 34.34409996587915 25.607286618647336 20.69880905339854 25 20.631036370948735 29.477833759941653 26.304360316163084 23.586769552946528 26 23.097235038711332 31.494481451038926 22.492322809025257 22.91596070122448 27 19.5707104758041 29.59438401315118 27.83991576488742 22.9949897461573 28 21.52099252976194 30.082980497179463 26.904582394814568 21.49144457824403 29 19.827613498723693 31.289404597051533 27.07776622176676 21.805215682458016 30 24.205517728184642 27.89807363771632 24.531717732640285 23.364690901458754 31 23.568477963911633 29.87532406012305 22.913498371931322 23.642699604033997 32 22.74477018846199 27.484871331569057 25.463298981885462 24.307059498083486 33 24.1518154988386 29.024530662448655 25.134753901912525 21.688899936800215 34 19.81588812113722 29.36808422573228 26.605468012583678 24.210559640546826 35 23.922115351919622 29.851873304950104 25.16266030056833 21.063351042561948 36 20.87668303138532 28.17326824967081 26.346454421698517 24.60359429724536 37 22.81875732103263 30.115577046869852 24.76645979192145 22.299205840176068 38 24.074310752992023 28.915015635791015 25.48030077938585 21.53037283183112 39 20.676296328432517 28.5827184349904 28.107488881410703 22.633496355166375 40 23.53013597920387 29.957753464555942 24.778302423283787 21.7338081329564 41 20.116526802454356 27.700852786711867 30.048038871971777 22.134581538862005 42 21.92563531027108 30.08169070564495 24.787213710249503 23.20546027383447 43 22.362874640470608 26.583541556496975 26.681448459344008 24.372135343688406 44 21.655599864454636 26.122734217348636 27.350381250652223 24.871284667544508 45 24.85393110871653 28.388663435934298 25.772028173737265 20.98537728161191 46 19.040957916447304 27.05466722792141 31.7085868457679 22.19578800986339 47 22.994520731053843 28.768213908408384 25.00530573335788 23.231959627179894 48 20.508271667618377 27.038486206852074 29.840734196242952 22.612507929286593 49 21.8923352379255 26.632670888584293 27.771439559782422 23.703554313707787 50 21.878616546149328 26.444478578321416 26.21219884833341 25.464706027195838 51 20.40590912128848 26.01919913326009 29.7478692057581 23.827022539693335 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 11936.0 1 9257.5 2 6579.0 3 4194.0 4 1809.0 5 1543.0 6 1277.0 7 1341.5 8 1406.0 9 1559.5 10 1713.0 11 1787.5 12 1862.0 13 2068.0 14 2274.0 15 2286.5 16 2299.0 17 2467.5 18 2636.0 19 2820.5 20 3005.0 21 3644.0 22 4283.0 23 5003.0 24 5723.0 25 7034.5 26 9321.5 27 10297.0 28 12181.5 29 14066.0 30 14203.0 31 14340.0 32 17170.0 33 20000.0 34 24734.5 35 29469.0 36 29672.5 37 29876.0 38 30832.5 39 31789.0 40 36771.5 41 41754.0 42 41259.0 43 40764.0 44 59123.5 45 77483.0 46 76848.0 47 76213.0 48 70947.0 49 65681.0 50 62164.0 51 58647.0 52 54311.5 53 49976.0 54 46217.5 55 42459.0 56 39943.5 57 37428.0 58 34908.5 59 32389.0 60 30920.5 61 29452.0 62 26914.5 63 24377.0 64 22248.5 65 20120.0 66 17825.0 67 15530.0 68 13551.0 69 11572.0 70 9871.5 71 8171.0 72 6571.5 73 4972.0 74 4657.0 75 3576.0 76 2810.0 77 2409.5 78 2009.0 79 1313.0 80 617.0 81 593.5 82 570.0 83 386.5 84 203.0 85 212.0 86 221.0 87 132.5 88 44.0 89 40.0 90 36.0 91 24.0 92 12.0 93 11.0 94 10.0 95 7.0 96 4.0 97 2.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 852851.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 21.700452213391983 #Duplication Level Percentage of deduplicated Percentage of total 1 78.26631703520442 16.984144727406402 2 8.87092169714519 3.850060247552826 3 3.102655790360697 2.0198710113997866 4 1.5768394942395476 1.3687252037173794 5 0.9893429378854542 1.0734594573120066 6 0.6749920082698018 0.878857909192819 7 0.5014663573223814 0.7617432706588659 8 0.38612826567716535 0.67033263820538 9 0.2827734976155933 0.5522681494998805 >10 3.280998500249721 16.687189202283566 >50 1.233118895152359 19.42009317230635 >100 0.8239249735009921 27.421189342714484 >500 0.0033222781189556137 0.45636095475476257 >1k 0.00498341717843342 2.286010311798146 >5k 5.537130198259355E-4 1.1662557732621712 >10k+ 0.0016611390594778069 4.403438627935173 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source AATGATACCTGTCTCTTATACACATCTGACGCACGCTGAATCGTATGCCGT 13521 1.5853883034668423 No Hit AATGATACGGCTGTCTCTTATACACATCTGACGCACGCTGAATCGTATGCC 12827 1.5040141830167286 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 10299 1.2075966376307232 No Hit AATCTGTCTCTTATACACATCTGACGCACGCTGAATCGTATGCCGTCTTCT 9706 1.1380651485429458 No Hit CTGTCTCTTATACACATCTGACGCACGCTGAATCGTATGCCGTCTTCTGCT 3010 0.352933865352799 No Hit AATGACTGTCTCTTATACACATCTGACGCACGCTGAATCGTATGCCGTCTT 2878 0.3374563669386563 No Hit CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 2297 0.2693319231612556 No Hit GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 2221 0.2604206361955371 No Hit AATGATCTGTCTCTTATACACATCTGACGCACGCTGAATCGTATGCCGTCT 2175 0.25502696250576007 No Hit AATGATACGGCGACTGTCTCTTATACACATCTGACGCACGCTGAATCGTAT 2003 0.23485931305702873 No Hit AACTGTCTCTTATACACATCTGACGCACGCTGAATCGTATGCCGTCTTCTG 1997 0.23415579040184042 No Hit AATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCACGCTGAATC 1326 0.1554785067966151 No Hit TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1118 0.13108972141675393 No Hit TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG 930 0.10904601155418707 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.4489647077860025 0.0 2 0.0 0.0 0.0 0.5595350184264308 0.0 3 0.0 0.0 0.0 0.9968916024018264 0.0 4 0.0 0.0 0.0 2.8261677596672805 0.0 5 0.0 0.0 0.0 2.9992343328436033 0.0 6 0.0 0.0 0.0 3.784951884913074 0.0 7 0.0 0.0 0.0 4.343079858029128 0.0 8 0.0 0.0 0.0 4.577470155982698 0.0 9 0.0 0.0 0.0 6.781606634687654 0.0 10 0.0 0.0 0.0 7.376904054752823 0.0 11 0.0 0.0 0.0 9.678830182528953 0.0 12 0.0 0.0 0.0 10.074092660968915 0.0 13 0.0 0.0 0.0 10.385987704769063 0.0 14 0.0 0.0 0.0 10.81795061505468 0.0 15 0.0 0.0 0.0 11.002508058265747 0.0 16 0.0 0.0 0.0 11.301153425393181 0.0 17 0.0 0.0 0.0 11.601440345382722 0.0 18 0.0 0.0 0.0 12.255012892052656 0.0 19 0.0 0.0 0.0 12.453289027039894 0.0 20 0.0 0.0 0.0 12.672905349234508 0.0 21 0.0 0.0 0.0 12.897680837567172 0.0 22 0.0 0.0 0.0 13.13078134398623 0.0 23 0.0 0.0 0.0 13.374551944008976 0.0 24 0.0 0.0 0.0 13.54140406706447 0.0 25 0.0 0.0 0.0 13.693247706809279 0.0 26 0.0 0.0 0.0 13.84016668796777 0.0 27 0.0 0.0 0.0 13.99705224007476 0.0 28 0.0 0.0 0.0 14.157220897905965 0.0 29 0.0 0.0 0.0 14.326535350254616 0.0 30 0.0 0.0 0.0 14.531612204242007 0.0 31 0.0 0.0 0.0 14.690139309211105 0.0 32 0.0 0.0 0.0 14.859571015335622 0.0 33 0.0 0.0 0.0 15.031465050753297 0.0 34 0.0 0.0 0.0 15.20007598044676 0.0 35 0.0 0.0 0.0 15.3681006412609 0.0 36 0.0 0.0 0.0 15.538704885144064 0.0 37 0.0 0.0 0.0 15.708957367699634 0.0 38 0.0 0.0 0.0 15.887652122117462 0.0 39 0.0 0.0 0.0 16.074320133294094 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCGTTTG 35 1.2114288E-7 45.0 41 CTCGTAC 35 1.2114288E-7 45.0 29 CGAGTTA 20 7.032262E-4 45.0 28 GATCGGT 35 1.2114288E-7 45.0 27 ACGTTAC 20 7.032262E-4 45.0 38 TAGACCG 20 7.032262E-4 45.0 1 TTAGATC 20 7.032262E-4 45.0 17 TAGAACG 20 7.032262E-4 45.0 1 TAGCGAG 20 7.032262E-4 45.0 1 ATAGCGG 45 3.8380676E-10 45.0 2 TTCGTGG 20 7.032262E-4 45.0 41 ATATGCG 20 7.032262E-4 45.0 1 GCGTTAG 25 3.889956E-5 45.0 1 GTAATCG 20 7.032262E-4 45.0 9 CGTTACT 20 7.032262E-4 45.0 39 GCCGATT 20 7.032262E-4 45.0 39 ACGATAG 25 3.889956E-5 45.0 1 ACCTACG 25 3.889956E-5 45.0 1 TCTCGAC 35 1.2114288E-7 45.0 43 TCGTCGT 25 3.889956E-5 45.0 14 >>END_MODULE