SRR3553455_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553455_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	843213
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AATGATACCTGTCTCTTATACACATCTGACGCACGCTGAATCGTATGCCGT	11976	1.4202817081804953	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCACGCTGAATCGTATGCC	11508	1.3647797175802554	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	10330	1.2250759891035836	No Hit
AATCTGTCTCTTATACACATCTGACGCACGCTGAATCGTATGCCGTCTTCT	9094	1.0784938088003861	No Hit
CTGTCTCTTATACACATCTGACGCACGCTGAATCGTATGCCGTCTTCTGCT	2924	0.3467688472544897	No Hit
AATGACTGTCTCTTATACACATCTGACGCACGCTGAATCGTATGCCGTCTT	2626	0.31142783614579	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2195	0.26031382343488535	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2106	0.2497589577010791	No Hit
AACTGTCTCTTATACACATCTGACGCACGCTGAATCGTATGCCGTCTTCTG	1966	0.23315579811981077	No Hit
AATGATCTGTCTCTTATACACATCTGACGCACGCTGAATCGTATGCCGTCT	1921	0.22781906825440312	No Hit
AATGATACGGCGACTGTCTCTTATACACATCTGACGCACGCTGAATCGTAT	1831	0.21714560852358775	No Hit
AATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCACGCTGAATC	1394	0.16532003183062882	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1056	0.12523526084156672	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	914	0.10839491326628029	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTGGTT	20	7.0322165E-4	45.0	31
CGAACTT	20	7.0322165E-4	45.0	33
TACCCGA	25	3.889919E-5	45.0	13
AAATCGT	25	3.889919E-5	45.0	39
CATATTA	20	7.0322165E-4	45.0	27
CGTATAG	20	7.0322165E-4	45.0	1
GATCGGT	35	1.2114106E-7	45.0	27
CGACGTA	20	7.0322165E-4	45.0	13
CGAAAGT	20	7.0322165E-4	45.0	43
ACACCGT	50	2.1827873E-11	45.0	43
CGTTGTA	20	7.0322165E-4	45.0	21
CGCGCAT	20	7.0322165E-4	45.0	19
TAACGTA	25	3.889919E-5	45.0	26
ATATGCG	40	6.8121153E-9	45.0	1
ACGATAG	25	3.889919E-5	45.0	1
ACCTACG	20	7.0322165E-4	45.0	1
GTTAACG	25	3.889919E-5	45.0	1
CGTAGGT	25	3.889919E-5	45.0	20
CGTAGAC	25	3.889919E-5	45.0	1
TACGACA	25	3.889919E-5	45.0	15