##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3553455_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 843213 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.30671253882471 31.0 31.0 34.0 30.0 34.0 2 31.602663858360817 31.0 31.0 34.0 30.0 34.0 3 31.786057615335626 31.0 31.0 34.0 30.0 34.0 4 35.55322083506777 37.0 35.0 37.0 33.0 37.0 5 35.33528657646407 37.0 35.0 37.0 33.0 37.0 6 32.712879189481185 37.0 35.0 37.0 26.0 37.0 7 34.05136424604459 37.0 35.0 37.0 26.0 37.0 8 35.11350750047734 37.0 35.0 37.0 32.0 37.0 9 36.99713832685217 39.0 37.0 39.0 33.0 39.0 10 36.48190670684631 38.0 35.0 39.0 32.0 39.0 11 36.58962919214955 38.0 35.0 39.0 32.0 39.0 12 36.44774689194782 38.0 35.0 39.0 32.0 39.0 13 36.5033544312054 39.0 35.0 39.0 32.0 39.0 14 37.59642462817817 39.0 36.0 41.0 32.0 41.0 15 37.68567728438722 39.0 36.0 41.0 33.0 41.0 16 37.50371258507637 39.0 36.0 41.0 32.0 41.0 17 37.53350221118507 39.0 36.0 41.0 32.0 41.0 18 37.346440341882776 39.0 36.0 41.0 32.0 41.0 19 37.27725497590763 39.0 36.0 41.0 32.0 41.0 20 37.27546183467285 39.0 36.0 40.0 32.0 41.0 21 37.31403334626008 39.0 36.0 40.0 32.0 41.0 22 37.153095362618934 39.0 35.0 40.0 31.0 41.0 23 37.012358680428314 39.0 35.0 40.0 31.0 41.0 24 36.97148881717905 39.0 35.0 40.0 31.0 41.0 25 36.965350391893864 39.0 35.0 40.0 31.0 41.0 26 36.85009837372052 39.0 35.0 40.0 31.0 41.0 27 36.81192652390321 39.0 35.0 40.0 31.0 41.0 28 36.70278565439575 39.0 35.0 40.0 30.0 41.0 29 36.55024412574284 39.0 35.0 40.0 30.0 41.0 30 36.631056447184754 39.0 35.0 40.0 30.0 41.0 31 36.16220219564926 39.0 35.0 40.0 29.0 41.0 32 36.251660019473135 38.0 35.0 40.0 30.0 41.0 33 36.20215769918158 38.0 35.0 40.0 30.0 41.0 34 36.11564575024342 38.0 35.0 40.0 30.0 41.0 35 36.100335265229546 38.0 35.0 40.0 30.0 41.0 36 36.072335222535706 38.0 35.0 40.0 30.0 41.0 37 35.92520395202636 38.0 35.0 40.0 29.0 41.0 38 35.86297056615588 38.0 35.0 40.0 29.0 41.0 39 35.687840438892664 38.0 35.0 40.0 28.0 41.0 40 35.52323671480397 38.0 34.0 40.0 27.0 41.0 41 35.4985845806457 38.0 34.0 40.0 27.0 41.0 42 35.42093041734414 38.0 34.0 40.0 27.0 41.0 43 35.46726983573546 38.0 34.0 40.0 27.0 41.0 44 35.25931763386001 38.0 34.0 40.0 26.0 41.0 45 35.09318760502981 38.0 34.0 40.0 26.0 41.0 46 34.712458180791806 37.0 33.0 40.0 24.0 41.0 47 34.73878960594772 37.0 33.0 40.0 25.0 41.0 48 34.68523967253825 37.0 33.0 40.0 24.0 41.0 49 34.60270655219974 37.0 33.0 40.0 25.0 41.0 50 34.487146189634174 37.0 33.0 40.0 24.0 41.0 51 33.162380086644774 36.0 31.0 39.0 21.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 2.0 8 6.0 9 12.0 10 15.0 11 23.0 12 28.0 13 27.0 14 40.0 15 77.0 16 136.0 17 266.0 18 498.0 19 1068.0 20 2100.0 21 3284.0 22 4424.0 23 5153.0 24 6247.0 25 6922.0 26 7800.0 27 9451.0 28 11833.0 29 15078.0 30 19531.0 31 25761.0 32 33895.0 33 44241.0 34 61292.0 35 76544.0 36 86663.0 37 115483.0 38 152508.0 39 152788.0 40 17.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 20.95745677545294 37.70115024317699 18.736309805470267 22.6050831758998 2 22.210046571862627 36.086374379901635 18.097206755588445 23.60637229264729 3 19.75953881166443 28.50098373720519 27.059592297557085 24.6798851535733 4 24.815200904160633 31.64052262002602 17.921687640015037 25.62258883579831 5 16.816747369881632 39.032130671609664 17.43580803426892 26.71531392423978 6 17.195418002331557 41.47765748393348 21.473696444433376 19.853228069301586 7 78.37094541948476 12.638325073261441 5.240550133833326 3.7501793734204765 8 79.60610189833412 6.371699677305734 4.087579294911251 9.934619129448906 9 77.38863134225872 10.089977265530774 6.920789883457679 5.600601508752829 10 35.1905153264952 36.99243251705085 13.670092847240259 14.146959309213686 11 24.40593302048237 27.35074056021432 26.793941744256788 21.449384675046517 12 25.881005155281052 24.05797823325779 32.32789342669053 17.733123184770633 13 24.601850303541337 27.788115221183734 26.557228126226708 21.052806349048222 14 19.88038609461666 26.859880006593826 30.47687832137313 22.782855577416385 15 18.37507249058067 31.111237611374587 25.715803717447432 24.797886180597313 16 20.23889574757505 31.65843031357439 28.063846264229795 20.038827674620766 17 20.159674957573 29.396842790611625 26.80556395596368 23.6379182958517 18 20.210314594295866 29.935259537032756 25.64512169523003 24.20930417344135 19 21.62442941463189 30.366230122163678 29.19309830375006 18.816242159454372 20 22.257839952657278 33.54727690393768 25.250203685189867 18.944679458215184 21 22.304803175472866 26.519278047183807 29.254174212209726 21.9217445651336 22 22.868243255262904 29.965975382258105 26.22635087457143 20.93943048790756 23 22.077695671200516 30.016496424983963 25.160546623451012 22.74526128036451 24 19.320266646742876 34.293588927115685 25.732169689034677 20.653974737106758 25 20.662987880879445 29.491006424236815 26.436380843274478 23.409624851609262 26 23.101161865388697 31.45610895467693 22.63081807325077 22.811911106683603 27 19.640707626661353 29.729498952222038 27.718856326930442 22.910937094186167 28 21.34205710775332 30.196166330452684 27.118533514070585 21.34324304772341 29 19.933397611279712 31.358031719150443 27.132290417723638 21.57628025184621 30 23.95954521574027 28.013918191488983 24.671939355773688 23.35459723699706 31 23.675038216915535 29.82733899975451 22.89872191249423 23.59890087083572 32 22.86006026946928 27.42308289838985 25.652474523044592 24.064382309096278 33 23.99607216681906 29.01117511233816 25.213202358123038 21.77955036271974 34 19.94751029692379 29.28180661351284 26.75943089112715 24.01125219843622 35 23.802052387712237 29.903950721822365 25.189720746715246 21.104276143750155 36 20.868392683699135 28.284549692663656 26.45084931090958 24.396208312727627 37 22.758780996023543 30.145408099732805 24.787331314863504 22.308479589380145 38 23.767185752591573 29.06999773485466 25.49759076295076 21.665225749603007 39 20.704021403844582 28.575342173329872 28.047480292642547 22.673156130183003 40 23.40476249773189 29.90122305989115 24.89371013018063 21.800304312196324 41 20.217786016107436 27.716247258996248 29.873353470594026 22.192613254302294 42 21.93063911490928 30.14813576166401 24.90628109386359 23.01494402956311 43 22.240406635096946 26.71697424019791 26.735237715737302 24.30738140896784 44 21.812400899891248 26.201920511187566 27.25681411458315 24.72886447433804 45 24.747009355880422 28.307556928083415 25.867841221613048 21.07759249442312 46 19.11142261800992 27.253374888669885 31.552170092254272 22.08303240106592 47 22.90536317632674 28.77588462227219 25.068873463763016 23.249878737638056 48 20.549256237747755 27.208664951797466 29.720485808449347 22.521593002005424 49 21.903362495597197 26.758126357160055 27.85772989742805 23.480781249814697 50 21.81999091569983 26.520701175147916 26.34150564566723 25.317802263485028 51 20.549137643750747 26.12530878911971 29.652650042160168 23.672903524969374 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 11903.0 1 9175.5 2 6448.0 3 4117.0 4 1786.0 5 1511.5 6 1237.0 7 1327.5 8 1418.0 9 1542.5 10 1667.0 11 1709.0 12 1751.0 13 2013.0 14 2275.0 15 2256.0 16 2237.0 17 2386.5 18 2536.0 19 2838.0 20 3140.0 21 3762.0 22 4384.0 23 5127.5 24 5871.0 25 7078.5 26 9269.5 27 10253.0 28 12205.5 29 14158.0 30 14289.0 31 14420.0 32 17263.0 33 20106.0 34 24548.0 35 28990.0 36 29514.5 37 30039.0 38 30878.0 39 31717.0 40 36795.0 41 41873.0 42 41269.5 43 40666.0 44 58072.5 45 75479.0 46 74869.5 47 74260.0 48 69415.5 49 64571.0 50 61350.5 51 58130.0 52 53760.0 53 49390.0 54 45732.5 55 42075.0 56 39726.0 57 37377.0 58 34869.0 59 32361.0 60 30646.0 61 28931.0 62 26387.0 63 23843.0 64 21705.0 65 19567.0 66 17460.0 67 15353.0 68 13375.5 69 11398.0 70 9643.5 71 7889.0 72 6389.5 73 4890.0 74 4590.0 75 3531.5 76 2773.0 77 2334.5 78 1896.0 79 1220.5 80 545.0 81 566.5 82 588.0 83 395.5 84 203.0 85 187.5 86 172.0 87 105.0 88 38.0 89 29.0 90 20.0 91 11.5 92 3.0 93 5.5 94 8.0 95 5.0 96 2.0 97 1.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 843213.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 22.000519372942353 #Duplication Level Percentage of deduplicated Percentage of total 1 77.13361282957145 16.969795433620213 2 8.865450837662097 3.9008904580770594 3 3.3504322565034093 2.2113374930080267 4 1.6987105594134078 1.4949005828558566 5 1.1071115891247771 1.2178514982274327 6 0.7862505355641489 1.0378752083799214 7 0.6107220457035849 0.9405341538589294 8 0.49853788705653734 0.8774473953866477 9 0.3618887699331399 0.716556680438789 >10 3.593625544823784 17.847665197735104 >50 1.223954069812872 19.408891536766063 >100 0.7587308285751677 25.439062239776923 >500 0.0038402861894621648 0.5834519961240691 >1k 0.004937510815022783 2.1748493004053784 >5k 5.486123127803092E-4 1.0976235938668355 >10k+ 0.0016458369383409277 4.081267231472749 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source AATGATACCTGTCTCTTATACACATCTGACGCACGCTGAATCGTATGCCGT 11976 1.4202817081804953 No Hit AATGATACGGCTGTCTCTTATACACATCTGACGCACGCTGAATCGTATGCC 11508 1.3647797175802554 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 10330 1.2250759891035836 No Hit AATCTGTCTCTTATACACATCTGACGCACGCTGAATCGTATGCCGTCTTCT 9094 1.0784938088003861 No Hit CTGTCTCTTATACACATCTGACGCACGCTGAATCGTATGCCGTCTTCTGCT 2924 0.3467688472544897 No Hit AATGACTGTCTCTTATACACATCTGACGCACGCTGAATCGTATGCCGTCTT 2626 0.31142783614579 No Hit CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 2195 0.26031382343488535 No Hit GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 2106 0.2497589577010791 No Hit AACTGTCTCTTATACACATCTGACGCACGCTGAATCGTATGCCGTCTTCTG 1966 0.23315579811981077 No Hit AATGATCTGTCTCTTATACACATCTGACGCACGCTGAATCGTATGCCGTCT 1921 0.22781906825440312 No Hit AATGATACGGCGACTGTCTCTTATACACATCTGACGCACGCTGAATCGTAT 1831 0.21714560852358775 No Hit AATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCACGCTGAATC 1394 0.16532003183062882 No Hit TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1056 0.12523526084156672 No Hit TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG 914 0.10839491326628029 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.42124587737617897 0.0 2 0.0 0.0 0.0 0.5219321808368704 0.0 3 0.0 0.0 0.0 0.9257447406527176 0.0 4 0.0 0.0 0.0 2.6297032896788832 0.0 5 0.0 0.0 0.0 2.79526050950353 0.0 6 0.0 0.0 0.0 3.5312548549417526 0.0 7 0.0 0.0 0.0 4.069078631377837 0.0 8 0.0 0.0 0.0 4.286105645904415 0.0 9 1.185939970090594E-4 0.0 0.0 6.356282457694556 0.0 10 1.185939970090594E-4 0.0 0.0 6.947354938787709 0.0 11 1.185939970090594E-4 0.0 0.0 9.14371576339549 0.0 12 1.185939970090594E-4 0.0 0.0 9.532822667582213 0.0 13 1.185939970090594E-4 0.0 0.0 9.844250503728002 0.0 14 1.185939970090594E-4 0.0 0.0 10.262294343184937 0.0 15 1.185939970090594E-4 0.0 0.0 10.445166286572906 0.0 16 1.185939970090594E-4 0.0 0.0 10.728843127418576 0.0 17 1.185939970090594E-4 0.0 0.0 11.02722562389337 0.0 18 1.185939970090594E-4 0.0 0.0 11.714003460572833 0.0 19 1.185939970090594E-4 0.0 0.0 11.911343871595907 0.0 20 1.185939970090594E-4 0.0 0.0 12.133944803981912 0.0 21 1.185939970090594E-4 0.0 0.0 12.357968864332026 0.0 22 1.185939970090594E-4 0.0 0.0 12.585432150595402 0.0 23 1.185939970090594E-4 0.0 0.0 12.819418106694275 0.0 24 1.185939970090594E-4 0.0 0.0 12.979757190650524 0.0 25 1.185939970090594E-4 0.0 0.0 13.124204679007558 0.0 26 1.185939970090594E-4 0.0 0.0 13.271379829295801 0.0 27 1.185939970090594E-4 0.0 0.0 13.426382183386641 0.0 28 1.185939970090594E-4 0.0 0.0 13.576047807612074 0.0 29 1.185939970090594E-4 0.0 0.0 13.739944711478595 0.0 30 1.185939970090594E-4 0.0 0.0 13.93586199453756 0.0 31 1.185939970090594E-4 0.0 0.0 14.100944838374172 0.0 32 1.185939970090594E-4 0.0 0.0 14.262351268303501 0.0 33 1.185939970090594E-4 0.0 0.0 14.434075375972618 0.0 34 1.185939970090594E-4 0.0 0.0 14.604969325662674 0.0 35 1.185939970090594E-4 0.0 0.0 14.768984823526203 0.0 36 1.185939970090594E-4 0.0 0.0 14.934660637347859 0.0 37 1.185939970090594E-4 0.0 0.0 15.100099263175496 0.0 38 2.371879940181188E-4 0.0 0.0 15.26850273892836 0.0 39 2.371879940181188E-4 0.0 0.0 15.457304382166784 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTGGTT 20 7.0322165E-4 45.0 31 CGAACTT 20 7.0322165E-4 45.0 33 TACCCGA 25 3.889919E-5 45.0 13 AAATCGT 25 3.889919E-5 45.0 39 CATATTA 20 7.0322165E-4 45.0 27 CGTATAG 20 7.0322165E-4 45.0 1 GATCGGT 35 1.2114106E-7 45.0 27 CGACGTA 20 7.0322165E-4 45.0 13 CGAAAGT 20 7.0322165E-4 45.0 43 ACACCGT 50 2.1827873E-11 45.0 43 CGTTGTA 20 7.0322165E-4 45.0 21 CGCGCAT 20 7.0322165E-4 45.0 19 TAACGTA 25 3.889919E-5 45.0 26 ATATGCG 40 6.8121153E-9 45.0 1 ACGATAG 25 3.889919E-5 45.0 1 ACCTACG 20 7.0322165E-4 45.0 1 GTTAACG 25 3.889919E-5 45.0 1 CGTAGGT 25 3.889919E-5 45.0 20 CGTAGAC 25 3.889919E-5 45.0 1 TACGACA 25 3.889919E-5 45.0 15 >>END_MODULE