SRR3553453_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553453_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	308517
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	9677	3.136618079392708	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2117	0.6861858503745336	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1812	0.5873258199710227	No Hit
CTGTCTCTTATACACATCTGACGCACGGCTTATCGTATGCCGTCTTCTGCT	1138	0.3688613593416246	TruSeq Adapter, Index 22 (95% over 22bp)
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1024	0.33191039715801723	No Hit
GATGGAGGGACAAAGAGGTGCAGACAGCACTGGTGGTGGGGTGGAAGGAGC	472	0.15298994869002355	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCACGGCTTATCGTATGCC	458	0.1484521112288788	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCACGGCTTATCGTATGCCGT	414	0.13419033635099523	No Hit
AATCTGTCTCTTATACACATCTGACGCACGGCTTATCGTATGCCGTCTTCT	381	0.12349400519258258	No Hit
AGTAATGGGAAAGGCATACCTGCCAGACCACATGGAGATGCCCACTGTGAT	339	0.10988049280914829	No Hit
AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	322	0.10437026160632965	No Hit
AGAAACGGATGGAAGGACCATGAGCATACTGTGCCCAGTGAAACACTTGTC	319	0.10339786786465577	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GGCAGTA	35	1.2080636E-7	45.000004	8
TAGACCG	35	1.2080636E-7	45.000004	1
CATTGGC	30	2.160321E-6	45.000004	43
GGACTAT	30	2.160321E-6	45.000004	8
TAGCGAG	35	1.2080636E-7	45.000004	1
TGCGAAG	30	2.160321E-6	45.000004	1
CGGGCCT	35	1.2080636E-7	45.000004	6
GGACGTA	30	2.160321E-6	45.000004	8
TTAACGG	35	1.2080636E-7	45.000004	2
ACTCGCG	35	1.2080636E-7	45.000004	1
CCGACGG	30	2.160321E-6	45.000004	2
TATACGG	30	2.160321E-6	45.000004	2
GCGTAGG	30	2.160321E-6	45.000004	2
GATAGCG	35	1.2080636E-7	45.000004	1
GTACGGG	70	0.0	45.000004	3
TACAACG	30	2.160321E-6	45.000004	1
CGGACAA	20	7.025255E-4	45.0	19
AACCGTC	40	6.7866495E-9	45.0	29
CTAGACG	25	3.8841506E-5	45.0	1
AACGTAG	45	3.8198777E-10	45.0	1