SRR3553451_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553451_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1177707
Sequences flagged as poor quality	0
Sequence length	51
%GC	43

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	12183	1.0344678260382252	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCAGTCTCCTTCGTATGCCGT	5461	0.46369767692643415	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCAGTCTCCTTCGTATGCC	4624	0.3926273682673195	No Hit
AATCTGTCTCTTATACACATCTGACGCAGTCTCCTTCGTATGCCGTCTTCT	4404	0.3739470003999297	No Hit
CTGTCTCTTATACACATCTGACGCAGTCTCCTTCGTATGCCGTCTTCTGCT	3380	0.2869983790535337	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2612	0.2217869130437367	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2436	0.20684261874982487	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1362	0.11564845925174938	No Hit
AATGACTGTCTCTTATACACATCTGACGCAGTCTCCTTCGTATGCCGTCTT	1238	0.10511952463558424	No Hit
TTTTTGCGGGAGGGTTTTTTGTTTTGTTTTGTTTTTCGAGATAGGGTTTCT	1235	0.10486479234648345	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTGCGAG	30	2.165547E-6	45.000004	1
GTCCGAT	30	2.165547E-6	45.000004	34
AACGTAG	70	0.0	45.0	1
GTCGCGA	20	7.0333574E-4	45.0	20
GTACCGG	80	0.0	45.0	2
ACCGGTT	20	7.0333574E-4	45.0	29
CGTATAG	40	6.8157533E-9	45.0	1
GTCGACT	25	3.890864E-5	45.0	10
CACGGCA	25	3.890864E-5	45.0	19
CGAAACG	35	1.2119563E-7	45.0	1
TAGCGTA	20	7.0333574E-4	45.0	41
TAGCGGA	20	7.0333574E-4	45.0	3
GACAACG	45	3.8562575E-10	45.0	1
TCTAGCG	50	2.1827873E-11	45.0	1
CCTCGCG	40	6.8157533E-9	45.0	1
CGTAGCG	25	3.890864E-5	45.0	1
GCTTACG	20	7.0333574E-4	45.0	1
TCTCGCG	20	7.0333574E-4	45.0	1
GTCGTTG	20	7.0333574E-4	45.0	31
TATAGCG	20	7.0333574E-4	45.0	1