SRR3553447_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553447_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1010428
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	13797	1.365460972973829	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3443	0.34074669348038655	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3309	0.32748498656015074	No Hit
CTGTCTCTTATACACATCTGACGCAGTGCTGATCGTATGCCGTCTTCTGCT	2447	0.24217460323743997	Illumina Single End Adapter 1 (95% over 21bp)
AGCCCAGGGAATGATACCTGTCTCTTATACACATCTGACGCAGTGCTGATC	1600	0.1583487393460989	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1563	0.15468692474872034	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCAGTGCTGATCGTATGCCGT	1076	0.1064895272102515	No Hit
AGCCCAGGGAATGATACGGCTGTCTCTTATACACATCTGACGCAGTGCTGA	1075	0.1063905592481602	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTTAACG	35	1.211738E-7	45.000004	1
CTAACCG	35	1.211738E-7	45.000004	1
ATACGAG	35	1.211738E-7	45.000004	1
AATCGCC	35	1.211738E-7	45.000004	24
TCCGCAT	25	3.8904698E-5	45.0	35
CAAGTCG	25	3.8904698E-5	45.0	9
GATCGAT	20	7.0328807E-4	45.0	9
CGTTGTA	20	7.0328807E-4	45.0	13
ATAGCGA	20	7.0328807E-4	45.0	43
TATGCGT	25	3.8904698E-5	45.0	18
ATTTTCG	20	7.0328807E-4	45.0	44
TAACACG	50	2.1827873E-11	45.0	1
AACGCAC	20	7.0328807E-4	45.0	31
TCGTCGT	20	7.0328807E-4	45.0	39
GTCGTAC	20	7.0328807E-4	45.0	20
TACCTCG	20	7.0328807E-4	45.0	17
CGTACTA	20	7.0328807E-4	45.0	38
TCCCGTT	20	7.0328807E-4	45.0	42
TATAGCG	20	7.0328807E-4	45.0	1
CGTCGGA	20	7.0328807E-4	45.0	27