Basic Statistics
Measure | Value |
---|---|
Filename | SRR3553447_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1010428 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 46 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 13797 | 1.365460972973829 | No Hit |
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 3443 | 0.34074669348038655 | No Hit |
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 3309 | 0.32748498656015074 | No Hit |
CTGTCTCTTATACACATCTGACGCAGTGCTGATCGTATGCCGTCTTCTGCT | 2447 | 0.24217460323743997 | Illumina Single End Adapter 1 (95% over 21bp) |
AGCCCAGGGAATGATACCTGTCTCTTATACACATCTGACGCAGTGCTGATC | 1600 | 0.1583487393460989 | No Hit |
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 1563 | 0.15468692474872034 | No Hit |
AATGATACCTGTCTCTTATACACATCTGACGCAGTGCTGATCGTATGCCGT | 1076 | 0.1064895272102515 | No Hit |
AGCCCAGGGAATGATACGGCTGTCTCTTATACACATCTGACGCAGTGCTGA | 1075 | 0.1063905592481602 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CTTAACG | 35 | 1.211738E-7 | 45.000004 | 1 |
CTAACCG | 35 | 1.211738E-7 | 45.000004 | 1 |
ATACGAG | 35 | 1.211738E-7 | 45.000004 | 1 |
AATCGCC | 35 | 1.211738E-7 | 45.000004 | 24 |
TCCGCAT | 25 | 3.8904698E-5 | 45.0 | 35 |
CAAGTCG | 25 | 3.8904698E-5 | 45.0 | 9 |
GATCGAT | 20 | 7.0328807E-4 | 45.0 | 9 |
CGTTGTA | 20 | 7.0328807E-4 | 45.0 | 13 |
ATAGCGA | 20 | 7.0328807E-4 | 45.0 | 43 |
TATGCGT | 25 | 3.8904698E-5 | 45.0 | 18 |
ATTTTCG | 20 | 7.0328807E-4 | 45.0 | 44 |
TAACACG | 50 | 2.1827873E-11 | 45.0 | 1 |
AACGCAC | 20 | 7.0328807E-4 | 45.0 | 31 |
TCGTCGT | 20 | 7.0328807E-4 | 45.0 | 39 |
GTCGTAC | 20 | 7.0328807E-4 | 45.0 | 20 |
TACCTCG | 20 | 7.0328807E-4 | 45.0 | 17 |
CGTACTA | 20 | 7.0328807E-4 | 45.0 | 38 |
TCCCGTT | 20 | 7.0328807E-4 | 45.0 | 42 |
TATAGCG | 20 | 7.0328807E-4 | 45.0 | 1 |
CGTCGGA | 20 | 7.0328807E-4 | 45.0 | 27 |