SRR3553444_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553444_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	734355
Sequences flagged as poor quality	0
Sequence length	51
%GC	43

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	18077	2.4616159759244507	No Hit
CTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCCGTCTTCTGCT	7081	0.964247536954198	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	4517	0.615097602658115	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3783	0.5151459444001879	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCCGT	3502	0.4768810725058044	No Hit
AATCTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCCGTCTTCT	2828	0.3850998495278169	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2091	0.2847396695058929	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCC	1869	0.2545090589701166	No Hit
AAACTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCCGTCTTCT	1507	0.20521409944781474	No Hit
AAAAACTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCCGTCTT	1361	0.1853327069332952	No Hit
AATGACTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCCGTCTT	994	0.1353568778043317	No Hit
CCTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCCGTCTTCTGC	883	0.12024157253644355	No Hit
AAAAAACTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCCGTCT	803	0.10934765882985749	No Hit
AGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	785	0.10689652824587563	No Hit
ACCTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCCGTCTTCTG	780	0.106215658639214	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGCGAG	35	1.2111195E-7	45.000004	1
CGGGTCG	35	1.2111195E-7	45.000004	6
CGGGTAG	35	1.2111195E-7	45.000004	6
ACACGTA	65	0.0	45.000004	27
ATCTACG	65	0.0	45.000004	1
TAGCGAT	35	1.2111195E-7	45.000004	45
TCGGCCG	35	1.2111195E-7	45.000004	13
CGTTAGC	35	1.2111195E-7	45.000004	32
TACGCGG	75	0.0	45.000004	2
GTCACTA	35	1.2111195E-7	45.000004	23
TATTCGG	35	1.2111195E-7	45.000004	2
TTGACGT	35	1.2111195E-7	45.000004	29
CTCGCTA	35	1.2111195E-7	45.000004	20
CCGGTCG	35	1.2111195E-7	45.000004	1
CAGTCAA	35	1.2111195E-7	45.000004	14
CACGTAC	65	0.0	45.000004	28
CCGCACG	35	1.2111195E-7	45.000004	1
CGGACGT	35	1.2111195E-7	45.000004	28
TCCGGAC	25	3.8894246E-5	45.0	4
ATTTACG	25	3.8894246E-5	45.0	1