SRR3553443_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553443_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	720886
Sequences flagged as poor quality	0
Sequence length	51
%GC	42

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	17914	2.4849976279189776	No Hit
CTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCCGTCTTCTGCT	6703	0.9298280171899579	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	4582	0.6356067394844677	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3660	0.5077085697322461	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCCGT	2973	0.4124091742661114	No Hit
AATCTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCCGTCTTCT	2597	0.36025113540837245	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2077	0.2881176774136271	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCC	1747	0.2423406752246541	No Hit
AAACTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCCGTCTTCT	1377	0.19101494549762377	No Hit
AAAAACTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCCGTCTT	1269	0.17603338114486894	No Hit
CCTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCCGTCTTCTGC	888	0.12318175134487283	No Hit
AATGACTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCCGTCTT	868	0.12040738757584417	No Hit
AGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	774	0.10736787786140944	No Hit
ACCTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCCGTCTTCTG	759	0.10528710503463794	No Hit
AAAAAACTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCCGTCT	727	0.10084812300419208	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCCGGAC	20	7.031533E-4	45.000004	4
CGTATAA	20	7.031533E-4	45.000004	26
CAACGTA	20	7.031533E-4	45.000004	44
CTCCGCA	20	7.031533E-4	45.000004	44
CGCATTC	20	7.031533E-4	45.000004	14
CTCCCGG	75	0.0	45.000004	2
AGGCGTC	20	7.031533E-4	45.000004	32
GCGTTTC	20	7.031533E-4	45.000004	29
CCGCTTC	20	7.031533E-4	45.000004	39
CCCACCG	20	7.031533E-4	45.000004	1
CGTTACT	20	7.031533E-4	45.000004	29
GTTACGT	20	7.031533E-4	45.000004	31
TACGCGT	20	7.031533E-4	45.000004	22
CTAGTCG	20	7.031533E-4	45.000004	37
TACGAAG	55	1.8189894E-12	45.000004	1
ACGTGTT	20	7.031533E-4	45.000004	45
TGTTCCG	20	7.031533E-4	45.000004	1
GACGGTG	20	7.031533E-4	45.000004	26
GTCCGCC	20	7.031533E-4	45.000004	21
AACGACC	20	7.031533E-4	45.000004	10