SRR3553442_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553442_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	376067
Sequences flagged as poor quality	0
Sequence length	51
%GC	40

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	15870	4.219992714064249	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3521	0.9362693349855212	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2554	0.6791343031959731	No Hit
CTGTCTCTTATACACATCTGACGCTGTGCATGTCGTATGCCGTCTTCTGCT	1820	0.4839563162947028	TruSeq Adapter, Index 3 (95% over 24bp)
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1338	0.355787665495776	No Hit
ACCTAGGGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	1173	0.31191250495257494	No Hit
ATGCAGGGGTTGCTTGTTTTGTTTTAATCTGAAGGTTCTGGTAACCTGTTT	542	0.14412325463281808	No Hit
CCTGTCTCTTATACACATCTGACGCTGTGCATGTCGTATGCCGTCTTCTGC	519	0.13800732316315975	RNA PCR Primer, Index 3 (95% over 23bp)
CGCGACGGGATACCACCACACCTAGAGTTAGAATTACATTTTTTTTTTAAT	449	0.11939361869028656	No Hit
GGTTACGGGGAACACACACTCCTCTACACAAACATACACACACTCCTCTAC	383	0.10184355447300615	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCACGCG	30	2.1615924E-6	45.000004	1
TATCACC	20	7.027226E-4	45.000004	18
CAGAACG	35	1.2090095E-7	45.000004	1
GTACCGG	20	7.027226E-4	45.000004	2
CCCCTAT	35	1.2090095E-7	45.000004	39
AGTCCAT	35	1.2090095E-7	45.000004	37
TCGCAGG	60	0.0	45.000004	2
CTCGTAG	35	1.2090095E-7	45.000004	1
CTGTAGG	40	6.7939254E-9	45.000004	2
CTCAACG	30	2.1615924E-6	45.000004	1
CAACGTG	30	2.1615924E-6	45.000004	1
CGAAATC	20	7.027226E-4	45.000004	24
CGAAAGT	20	7.027226E-4	45.000004	42
TCCGATG	30	2.1615924E-6	45.000004	1
CTATCCG	35	1.2090095E-7	45.000004	1
GAGTCGA	20	7.027226E-4	45.000004	29
GACCGTT	35	1.2090095E-7	45.000004	34
ATCAGCG	35	1.2090095E-7	45.000004	1
TAAACGG	70	0.0	45.000004	2
CGCGCAT	35	1.2090095E-7	45.000004	38