SRR3553439_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553439_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	520786
Sequences flagged as poor quality	0
Sequence length	51
%GC	42

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	15425	2.961869174670594	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3682	0.7070082529100244	No Hit
CTGTCTCTTATACACATCTGACGCAGATCGACTCGTATGCCGTCTTCTGCT	2468	0.473899067947295	TruSeq Adapter, Index 14 (95% over 23bp)
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2428	0.46621836992545884	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1623	0.3116443222360048	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCAGATCGACTCGTATGCCGT	845	0.16225474571129025	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCAGATCGACTCGTATGCC	757	0.14535721006325056	No Hit
AAGCGAGGGAAGGAAATTGAAAAAGGAACCTAATTAATTCTTACAAATTGC	732	0.1405567737996029	No Hit
AATCTGTCTCTTATACACATCTGACGCAGATCGACTCGTATGCCGTCTTCT	652	0.12519537775593045	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	591	0.11348231327263023	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TGATCGT	20	7.02973E-4	45.0	19
CGGACAG	25	3.887857E-5	45.0	1
TCACGAG	20	7.02973E-4	45.0	1
CCTTCCG	20	7.02973E-4	45.0	19
TTAGGTC	20	7.02973E-4	45.0	19
CGGCGGA	20	7.02973E-4	45.0	18
AATCCGA	20	7.02973E-4	45.0	17
TCGTTCA	25	3.887857E-5	45.0	16
TCGCACA	20	7.02973E-4	45.0	15
CGAACAG	45	3.8380676E-10	45.0	1
GGTGTTA	20	7.02973E-4	45.0	9
GCGACGC	45	3.8380676E-10	45.0	15
TCCGCGG	20	7.02973E-4	45.0	2
GTCTGCG	35	1.21021E-7	45.0	1
CAACGAA	20	7.02973E-4	45.0	32
CATGCGG	20	7.02973E-4	45.0	2
CGACGAA	20	7.02973E-4	45.0	17
TAGACGG	70	0.0	45.0	2
TAGCGAG	35	1.21021E-7	45.0	1
GTCTCGC	35	1.21021E-7	45.0	25