SRR3553432_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553432_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	501621
Sequences flagged as poor quality	0
Sequence length	51
%GC	43

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	10969	2.1867106839625934	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2730	0.5442355882229811	No Hit
CTGTCTCTTATACACATCTGACGCTGCACGATTCGTATGCCGTCTTCTGCT	2423	0.48303400375981065	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2284	0.4553238401103622	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1172	0.2336425309147743	No Hit
CTATTTGGGTTTGTGTTTTGTTTTTAATTGAAAGATTGGAATCCCAAGCAT	882	0.17582995927204004	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCTGCACGATTCGTATGCCGT	640	0.1275863650046549	No Hit
GCATCTGGGGTCCCTTCCCCCACCCATCACAGAAACACTTTCCTTTACCCT	588	0.11721997284802671	No Hit
AATCTGTCTCTTATACACATCTGACGCTGCACGATTCGTATGCCGTCTTCT	563	0.11223613046503238	No Hit
ATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCATA	505	0.10067361613648551	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCATAAC	20	7.029479E-4	45.000004	36
ACGCGAG	30	2.1630458E-6	45.000004	1
TCCGGCA	20	7.029479E-4	45.000004	33
TCACGAT	30	2.1630458E-6	45.000004	32
CTATGCA	20	7.029479E-4	45.000004	29
ACGCCTA	20	7.029479E-4	45.000004	32
CTCGTGA	20	7.029479E-4	45.000004	30
ATTAGCG	40	6.8012014E-9	45.000004	1
CGTATAG	20	7.029479E-4	45.000004	1
CTATCCA	20	7.029479E-4	45.000004	13
CGGCCGT	60	0.0	45.000004	41
TCACACG	20	7.029479E-4	45.000004	1
CGTGATC	20	7.029479E-4	45.000004	40
CGTTGCA	20	7.029479E-4	45.000004	25
GGCCGTA	60	0.0	45.000004	42
ATTACGT	20	7.029479E-4	45.000004	42
GGCCGCT	20	7.029479E-4	45.000004	34
GATCCGT	20	7.029479E-4	45.000004	9
CCAATAT	20	7.029479E-4	45.000004	12
CCTAATC	20	7.029479E-4	45.000004	35