SRR3553429_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553429_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	540032
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	19982	3.7001511021569096	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	4816	0.8917990045034367	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3495	0.6471838705854468	No Hit
CTGTCTCTTATACACATCTGACGCCTTGGTCATCGTATGCCGTCTTCTGCT	2388	0.44219601801374736	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2037	0.3771998696373548	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCCTTGGTCATCGTATGCCGT	1417	0.26239185826025124	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCCTTGGTCATCGTATGCC	1258	0.23294915856838114	No Hit
AATCTGTCTCTTATACACATCTGACGCCTTGGTCATCGTATGCCGTCTTCT	1144	0.211839298411946	No Hit
AAACTGTCTCTTATACACATCTGACGCCTTGGTCATCGTATGCCGTCTTCT	635	0.11758562455558189	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	555	0.10277168760369755	No Hit
TATGATGGGGAAACTTCGTATTTCTAACATTAGCTCTTCAATATAGTTTAT	549	0.10166064233230623	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTTGTCC	20	7.029959E-4	45.000004	36
CGGGTCA	65	0.0	45.000004	6
GTCGCAC	20	7.029959E-4	45.000004	37
ATTAGTG	20	7.029959E-4	45.000004	23
GCGACGT	35	1.2103192E-7	45.000004	13
CTCGTGA	20	7.029959E-4	45.000004	37
TTGGACG	20	7.029959E-4	45.000004	19
CGAAACG	70	0.0	45.000004	1
GCGGTCA	20	7.029959E-4	45.000004	22
TAGGTTG	20	7.029959E-4	45.000004	33
TAGGTGA	20	7.029959E-4	45.000004	13
CTATAGT	20	7.029959E-4	45.000004	30
CGGCACG	20	7.029959E-4	45.000004	1
ATTCGCT	20	7.029959E-4	45.000004	10
ATAGAAC	35	1.2103192E-7	45.000004	11
CGACAAT	20	7.029959E-4	45.000004	20
CATTCGT	20	7.029959E-4	45.000004	42
ATGTCGC	20	7.029959E-4	45.000004	11
GCGCAAC	40	6.8030204E-9	45.000004	42
AATATGC	40	6.8030204E-9	45.000004	22