##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3553426_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 779032 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.368960453485865 31.0 31.0 34.0 30.0 34.0 2 31.576933938528843 31.0 31.0 34.0 30.0 34.0 3 31.633179381591514 31.0 31.0 34.0 30.0 34.0 4 35.29602635065055 37.0 35.0 37.0 33.0 37.0 5 35.02055114552419 35.0 35.0 37.0 32.0 37.0 6 33.77388605346122 35.0 35.0 37.0 30.0 37.0 7 34.29180187720145 35.0 35.0 37.0 30.0 37.0 8 35.00418981505253 37.0 35.0 37.0 32.0 37.0 9 36.802508754454244 39.0 35.0 39.0 33.0 39.0 10 36.24436865237885 38.0 35.0 39.0 32.0 39.0 11 36.25642592345372 38.0 35.0 39.0 32.0 39.0 12 35.80933774222368 37.0 35.0 39.0 30.0 39.0 13 36.00151726758336 37.0 35.0 39.0 31.0 39.0 14 37.01463996344181 39.0 36.0 40.0 31.0 41.0 15 37.227103636307625 39.0 36.0 40.0 32.0 41.0 16 36.73443452900523 38.0 35.0 40.0 30.0 41.0 17 36.78803694841804 38.0 35.0 40.0 30.0 41.0 18 36.49915151110609 38.0 35.0 40.0 30.0 41.0 19 36.29147198061184 38.0 34.0 40.0 29.0 41.0 20 36.57899547130285 38.0 35.0 40.0 30.0 41.0 21 36.67358593741977 39.0 35.0 40.0 30.0 41.0 22 36.47263783772682 38.0 35.0 40.0 30.0 41.0 23 36.38537441337455 38.0 35.0 40.0 30.0 41.0 24 36.368160743076025 38.0 35.0 40.0 30.0 41.0 25 36.378325922426804 38.0 35.0 40.0 30.0 41.0 26 36.09344673902998 38.0 35.0 40.0 29.0 41.0 27 36.01239486953039 38.0 35.0 40.0 29.0 41.0 28 35.91255558179895 38.0 34.0 40.0 29.0 41.0 29 35.72385986711714 38.0 34.0 40.0 27.0 41.0 30 35.99877797060968 38.0 35.0 40.0 29.0 41.0 31 35.5984478172912 38.0 34.0 40.0 27.0 41.0 32 35.43931443124288 38.0 34.0 40.0 26.0 41.0 33 35.319199981515524 38.0 34.0 40.0 26.0 41.0 34 34.885805717865246 38.0 34.0 40.0 24.0 41.0 35 35.02428141591103 38.0 34.0 40.0 25.0 41.0 36 34.7780655993592 38.0 34.0 40.0 24.0 41.0 37 34.92215210671706 38.0 34.0 40.0 24.0 41.0 38 34.82550780969203 38.0 34.0 40.0 24.0 41.0 39 34.66710610090471 38.0 33.0 40.0 24.0 41.0 40 34.44981592540486 38.0 33.0 40.0 23.0 41.0 41 34.502994742192875 37.0 33.0 40.0 23.0 41.0 42 34.41586481684963 37.0 33.0 40.0 23.0 41.0 43 34.484113617925836 37.0 33.0 40.0 23.0 41.0 44 34.450978907156575 37.0 33.0 40.0 23.0 41.0 45 34.17365525421292 37.0 33.0 40.0 23.0 41.0 46 33.81427335462472 37.0 32.0 40.0 22.0 41.0 47 33.84463154273509 37.0 32.0 40.0 22.0 41.0 48 33.72838599698087 37.0 32.0 40.0 21.0 41.0 49 33.521642243194115 36.0 32.0 40.0 20.0 41.0 50 33.48217659865063 36.0 32.0 40.0 20.0 41.0 51 31.762658016615493 35.0 29.0 39.0 13.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 3.0 9 6.0 10 8.0 11 8.0 12 12.0 13 16.0 14 34.0 15 65.0 16 155.0 17 272.0 18 721.0 19 1796.0 20 4180.0 21 6570.0 22 8315.0 23 8698.0 24 8462.0 25 8762.0 26 9110.0 27 10285.0 28 12463.0 29 15958.0 30 21069.0 31 27743.0 32 36295.0 33 45857.0 34 60367.0 35 71407.0 36 78949.0 37 97368.0 38 126361.0 39 117701.0 40 16.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 16.430005442651908 46.714127275901376 14.962543258813502 21.893324022633216 2 17.816212941188553 45.49941465819119 16.99288347590343 19.691488924716825 3 17.6996580371538 24.534935663746804 36.1665502829152 21.598856016184186 4 33.68218507070313 24.792177984986495 16.066220643054457 25.459416301255917 5 15.568680105566909 43.778432721634026 16.700597664794255 23.952289508004807 6 18.420809414760882 32.65963400733218 30.9677907967837 17.951765781123243 7 65.51348339991169 21.839154232432044 7.636528409616036 5.010833958040235 8 67.3621879460664 5.317881678801385 5.349074235718174 21.970856139414042 9 73.28184208094147 7.86219308064367 9.822317953562882 9.03364688485197 10 39.40942092237546 26.82829460150546 16.968109140574455 16.794175335544626 11 26.30829028846055 24.072695344992248 23.045523162078066 26.573491204469136 12 27.433917990531842 21.14958050503702 35.124744554780804 16.291756949650335 13 23.180305815422216 30.909256615902812 22.758500292670906 23.151937276004066 14 17.483877427371404 24.067560767721993 35.245920578358785 23.20264122654782 15 16.679930991281488 28.534386263978888 22.652856365335442 32.132826379404186 16 18.703724622351842 30.706825907023074 30.957521642243197 19.63192782838189 17 17.250254161574876 27.343421066143627 27.54033210445784 27.865992667823658 18 18.34558785775167 28.760307663870034 24.12121710019614 28.772887378182155 19 22.026181209501022 28.03248133581162 31.516677106973784 18.424660347713573 20 19.869787120426373 36.92287351482352 24.706045451277998 18.501293913472104 21 19.256205136631102 24.547387013627166 31.242105587446982 24.954302262294746 22 23.094686739440743 31.390879963852576 25.560952566775175 19.953480729931506 23 22.79161831606404 28.00180223662186 22.139141909446593 27.067437537867505 24 16.610742562564823 40.06125550683412 22.99366393164851 20.334337998952545 25 19.82717012908327 23.9461280152805 30.448428305897572 25.77827354973865 26 26.375039792973844 29.865268692428554 20.328818328387026 23.43087318621058 27 18.365484344673902 28.954908142412634 29.908270777066924 22.771336735846536 28 26.913400219759907 24.78293574590004 25.644261082985036 22.659402951355016 29 18.73183643290648 37.633242280163074 25.0517308659978 18.583190420932645 30 26.26182236416476 23.77951098286078 21.77240472791875 28.18626192505571 31 27.09529261955863 28.99187709875846 21.344437712443135 22.568392569239776 32 23.89760626007661 24.236488359913327 24.10619846168065 27.759706918329414 33 28.282535248872957 27.058708756508075 22.226044629745633 22.43271136487333 34 21.41888908286181 27.91939227143429 27.030853674816953 23.630864970886947 35 32.32537302703869 26.5535947175469 22.65324145863071 18.4677907967837 36 20.16656568664702 28.437342753571098 27.922087924501177 23.474003635280706 37 25.456592283757278 24.74622351841773 25.643362531962744 24.15382166586225 38 23.049117366167245 29.73998500703437 23.604678626808656 23.606218999989732 39 18.483964715185 24.063838199201058 34.46379609566744 22.9884009899465 40 25.23349490136477 29.48582343215683 22.79636780003902 22.484313866439376 41 19.2470912619764 22.907916491235277 36.20262068823873 21.642371558549584 42 28.127984473038335 23.846902309532855 23.403531562246478 24.62158165518233 43 22.814723913780178 24.090666365438135 28.856324258823772 24.23828546195792 44 21.24585382885427 20.982706743753788 28.207698785159018 29.56374064223293 45 29.326009714620195 26.838948849341232 23.416368005422115 20.418673430616458 46 17.856391008328284 24.610799042914795 36.47411146140338 21.058698487353535 47 24.13585064541636 27.665872518715535 23.518417728668396 24.679859107199704 48 19.96413497776728 21.951858203514103 35.16440916419351 22.919597654525102 49 23.30135347456844 23.139357561691945 28.28150833341891 25.277780630320706 50 23.426765524394376 21.977659454297125 25.651321126731634 28.94425389457686 51 18.34186528923074 23.1242105587447 34.51924953018618 24.014674621838385 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 7870.0 1 5897.5 2 3925.0 3 2463.5 4 1002.0 5 910.5 6 819.0 7 923.0 8 1027.0 9 1097.5 10 1168.0 11 1253.5 12 1339.0 13 1458.5 14 1578.0 15 1621.0 16 1664.0 17 1767.0 18 1870.0 19 2144.5 20 2419.0 21 2299.5 22 2180.0 23 2774.0 24 3368.0 25 5019.0 26 6854.0 27 7038.0 28 7846.5 29 8655.0 30 12279.0 31 15903.0 32 16071.0 33 16239.0 34 17868.0 35 19497.0 36 20038.5 37 20580.0 38 23147.0 39 25714.0 40 25529.5 41 25345.0 42 28543.5 43 31742.0 44 72263.0 45 112784.0 46 100628.5 47 88473.0 48 75161.0 49 61849.0 50 55198.0 51 48547.0 52 45744.0 53 42941.0 54 40906.5 55 38872.0 56 36841.0 57 34810.0 58 32486.5 59 30163.0 60 28196.5 61 26230.0 62 23666.5 63 21103.0 64 20100.0 65 19097.0 66 16634.5 67 14172.0 68 12240.5 69 10309.0 70 9237.0 71 8165.0 72 6777.0 73 5389.0 74 4586.0 75 2988.5 76 2194.0 77 1619.5 78 1045.0 79 847.0 80 649.0 81 568.5 82 488.0 83 320.5 84 153.0 85 117.5 86 82.0 87 61.0 88 40.0 89 38.5 90 37.0 91 35.0 92 33.0 93 19.5 94 6.0 95 5.0 96 4.0 97 2.5 98 1.0 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 779032.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 21.518955403151708 #Duplication Level Percentage of deduplicated Percentage of total 1 79.227287343104 17.048884630489407 2 8.414890257020605 3.621592963264844 3 2.998094646001559 1.9354759494520635 4 1.5857389660394807 1.3649378436497395 5 0.9405890936572521 1.0120247379550646 6 0.6913667912259766 0.8926494688567133 7 0.46330109111517764 0.6978828862557324 8 0.3718126995458016 0.6400816719881239 9 0.2909009246464223 0.563389562178176 >10 3.2109786598888137 16.384813033385072 >50 1.1471787360129575 17.609669472986408 >100 0.6427583860546533 21.074561474794855 >500 0.0048327698199597995 0.7572220271079093 >1k 0.006040962274949749 2.644232318180598 >5k 0.0024163849099798997 3.110525092641726 >10k+ 0.001812288682484925 10.642056866813562 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source AATGATACCTGTCTCTTATACACATCTGACGCGAGCTATGTCGTATGCCGT 31537 4.048229084299489 No Hit AATGATACGGCTGTCTCTTATACACATCTGACGCGAGCTATGTCGTATGCC 27229 3.4952351122932046 No Hit AATCTGTCTCTTATACACATCTGACGCGAGCTATGTCGTATGCCGTCTTCT 23099 2.9650900091395473 RNA PCR Primer, Index 27 (95% over 21bp) AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 6812 0.8744185091241438 No Hit AATGACTGTCTCTTATACACATCTGACGCGAGCTATGTCGTATGCCGTCTT 6734 0.8644060834471498 No Hit AATGATCTGTCTCTTATACACATCTGACGCGAGCTATGTCGTATGCCGTCT 5380 0.6906006428490742 No Hit CTGTCTCTTATACACATCTGACGCGAGCTATGTCGTATGCCGTCTTCTGCT 5002 0.6420788876451802 RNA PCR Primer, Index 38 (96% over 26bp) AATGATACGGCGACTGTCTCTTATACACATCTGACGCGAGCTATGTCGTAT 4301 0.5520954209839903 No Hit AACTGTCTCTTATACACATCTGACGCGAGCTATGTCGTATGCCGTCTTCTG 4108 0.527321085655018 RNA PCR Primer, Index 38 (95% over 24bp) AATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGAGCTATGTC 3339 0.42860883763439755 No Hit CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1507 0.19344519865679458 No Hit AATGCTGTCTCTTATACACATCTGACGCGAGCTATGTCGTATGCCGTCTTC 1354 0.17380544059807557 No Hit GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1237 0.15878680208258455 No Hit AATGATACGGCGCTGTCTCTTATACACATCTGACGCGAGCTATGTCGTATG 1234 0.15840170878731555 No Hit AATGATACGGCGACCACCGATCGTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1194 0.1532671315170622 No Hit AATGATACGGCGACCTGTCTCTTATACACATCTGACGCGAGCTATGTCGTA 1052 0.13503938220766284 No Hit AATGATACGGCCTGTCTCTTATACACATCTGACGCGAGCTATGTCGTATGC 1015 0.1302898982326785 No Hit AATGAAACCTGTCTCTTATACACATCTGACGCGAGCTATGTCGTATGCCGT 920 0.11809527721582681 No Hit AATGAAACGGCTGTCTCTTATACACATCTGACGCGAGCTATGTCGTATGCC 879 0.11283233551381716 No Hit AATGATACCTGTCTCTTCTACACATCTGACGCGAGCTATGTCGTATGCCGT 872 0.1119337844915228 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.80137914745479 0.0 2 0.0 0.0 0.0 0.8963688269544768 0.0 3 0.0 0.0 0.0 1.6398556156871604 0.0 4 0.0 0.0 0.0 5.409277154211893 0.0 5 0.0 0.0 0.0 5.675890078969799 0.0 6 0.0 0.0 0.0 6.960047854260159 0.0 7 0.0 0.0 0.0 7.960006777641997 0.0 8 0.0 0.0 0.0 8.18220560901221 0.0 9 0.0 0.0 0.0 13.009221700777376 0.0 10 0.0 0.0 0.0 13.488791217819037 0.0 11 0.0 0.0 0.0 17.929558734429396 0.0 12 0.0 0.0 0.0 18.323509175489583 0.0 13 0.0 0.0 0.0 18.64878464556013 0.0 14 0.0 0.0 0.0 19.434631696772406 0.0 15 0.0 0.0 0.0 19.696751866418836 0.0 16 0.0 0.0 0.0 19.961439324700397 0.0 17 0.0 0.0 0.0 20.203534642992842 0.0 18 0.0 0.0 0.0 21.14431756333501 0.0 19 0.0 0.0 0.0 21.368313496749813 0.0 20 0.0 0.0 0.0 21.531079596216845 0.0 21 0.0 0.0 0.0 21.742239086456014 0.0 22 0.0 0.0 0.0 21.92323293523244 0.0 23 0.0 0.0 0.0 22.0997340288974 0.0 24 0.0 0.0 0.0 22.233874860082768 0.0 25 0.0 0.0 0.0 22.35530761252426 0.0 26 0.0 0.0 0.0 22.47892256030561 0.0 27 0.0 0.0 0.0 22.60497643229033 0.0 28 0.0 0.0 0.0 22.728591380071677 0.0 29 0.0 0.0 0.0 22.847071750582774 0.0 30 0.0 0.0 0.0 23.02049209788558 0.0 31 0.0 0.0 0.0 23.140127748282485 0.0 32 0.0 0.0 0.0 23.265411433676665 0.0 33 0.0 0.0 0.0 23.40211955349716 0.0 34 0.0 0.0 0.0 23.525477772414998 0.0 35 0.0 0.0 0.0 23.661800798940224 0.0 36 0.0 0.0 0.0 23.784902288994548 0.0 37 0.0 0.0 0.0 23.91827293358938 0.0 38 0.0 0.0 0.0 24.043043161256534 0.0 39 0.0 0.0 0.0 24.17795417903244 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TGCATAG 35 1.2112469E-7 45.000004 1 AATTGCG 35 1.2112469E-7 45.000004 1 TACGAAC 35 1.2112469E-7 45.000004 34 ACTACGG 65 0.0 45.000004 2 TAAGCGG 35 1.2112469E-7 45.000004 2 AATACGC 35 1.2112469E-7 45.000004 42 CTTAACG 25 3.8896447E-5 45.0 3 GTCGCTA 20 7.031886E-4 45.0 13 CATTGCG 20 7.031886E-4 45.0 12 CGGTTAT 45 3.8380676E-10 45.0 30 ATTAACG 25 3.8896447E-5 45.0 1 GTCTAAC 20 7.031886E-4 45.0 1 TCGATTG 45 3.8380676E-10 45.0 21 CCGTCGA 85 0.0 45.0 40 CATTACG 25 3.8896447E-5 45.0 1 GTTACGC 20 7.031886E-4 45.0 35 AATGCGT 20 7.031886E-4 45.0 43 ACGGCTA 270 0.0 45.0 29 ATATATC 25 3.8896447E-5 45.0 34 CTAAACG 40 6.8102963E-9 45.0 1 >>END_MODULE