SRR3553424_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553424_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	651221
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	13116	2.0140628143134203	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3137	0.48171050994977127	No Hit
CTGTCTCTTATACACATCTGACGCATTCGTCCTCGTATGCCGTCTTCTGCT	3045	0.46758320140167475	TruSeq Adapter, Index 20 (95% over 22bp)
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2353	0.3613212718877309	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1646	0.2527559768496409	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCATTCGTCCTCGTATGCCGT	1403	0.21544145535847278	No Hit
AATCTGTCTCTTATACACATCTGACGCATTCGTCCTCGTATGCCGTCTTCT	1192	0.18304078031881652	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCATTCGTCCTCGTATGCC	1063	0.16323183681115935	No Hit
TATTACGGACTGCACTGGCTGCTTGGGCTTTTGTGAGGGGTCGGACTGCAA	803	0.12330683439262555	No Hit
TCTTATGGGACAACTGTTTAATCAGTTTTATTTTTGTACAGTATTAGTGAC	664	0.10196231386887093	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGCGAT	40	6.8066583E-9	45.0	42
CGGACAA	25	3.8889368E-5	45.0	27
TCACGCC	20	7.0310326E-4	45.0	43
CTTCGAT	35	1.2108467E-7	45.0	32
AGCGTAA	20	7.0310326E-4	45.0	44
ACGCCTC	20	7.0310326E-4	45.0	45
CGAGTTA	25	3.8889368E-5	45.0	33
AATCACG	20	7.0310326E-4	45.0	1
CGAAATT	35	1.2108467E-7	45.0	13
CTCCGAT	20	7.0310326E-4	45.0	44
ATAGGCG	20	7.0310326E-4	45.0	1
AGATACG	25	3.8889368E-5	45.0	1
CGACGAG	25	3.8889368E-5	45.0	1
ACGTTAG	20	7.0310326E-4	45.0	1
TCACACG	25	3.8889368E-5	45.0	1
CGGTTGA	50	2.1827873E-11	45.0	31
CGGCACG	20	7.0310326E-4	45.0	1
GCACGTC	20	7.0310326E-4	45.0	11
ACTTCGC	25	3.8889368E-5	45.0	29
TTCGTAG	40	6.8066583E-9	45.0	1