SRR3553418_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553418_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	424001
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	6097	1.437968306678522	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1384	0.32641432449451774	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCTTAGACGGTCGTATGCC	1352	0.31886717248308377	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCTTAGACGGTCGTATGCCGT	1258	0.29669741344949657	No Hit
CTGTCTCTTATACACATCTGACGCTTAGACGGTCGTATGCCGTCTTCTGCT	1229	0.28985780693913454	Illumina Single End Adapter 1 (95% over 21bp)
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1055	0.24882016787696254	No Hit
GTTATAGGGGTTTGTTGTTAGTTTTATTTTCACTTGACTGTTAAATGTTTT	1043	0.24598998587267484	No Hit
AATCTGTCTCTTATACACATCTGACGCTTAGACGGTCGTATGCCGTCTTCT	1035	0.24410319786981635	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	689	0.1624996167461869	No Hit
ATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCATA	575	0.13561288770545352	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	569	0.13419779670330967	No Hit
CGGCTAGGGAATGATACCTGTCTCTTATACACATCTGACGCTTAGACGGTC	537	0.12665064469187573	No Hit
GATGCCGGGGGTAATATTGTAGAATCAGGCAAAAAGCAAAGCAAAGCAAAA	469	0.11061294666757861	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CAGCGCG	30	2.162249E-6	45.000004	1
GTACCGC	35	1.2095006E-7	45.000004	40
ATAGCGG	35	1.2095006E-7	45.000004	2
CCGGAAG	35	1.2095006E-7	45.000004	1
ATTCGGA	30	2.162249E-6	45.000004	38
TACGGGT	30	2.162249E-6	45.000004	4
ATTCCGG	30	2.162249E-6	45.000004	2
CTACGCG	35	1.2095006E-7	45.000004	1
TATTCGG	30	2.162249E-6	45.000004	37
ACTACGG	70	0.0	45.000004	2
GAACCGC	30	2.162249E-6	45.000004	9
TAGTGCG	35	1.2095006E-7	45.000004	1
TATACCG	30	2.162249E-6	45.000004	1
TTATTCG	30	2.162249E-6	45.000004	36
TTCGAGA	35	1.2095006E-7	45.000004	35
GTTATCG	35	1.2095006E-7	45.000004	32
TAGTACG	30	2.162249E-6	45.000004	1
TAGTACC	35	1.2095006E-7	45.000004	38
AACACGT	30	2.162249E-6	45.000004	41
TCGCCTT	25	3.8866274E-5	45.0	43