SRR3553415_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553415_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	762201
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	13156	1.7260538886724106	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2845	0.3732611214102317	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2640	0.3463653288305841	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1682	0.22067669814130392	No Hit
CTGTCTCTTATACACATCTGACGCGTGCAGTATCGTATGCCGTCTTCTGCT	1521	0.19955366104216604	TruSeq Adapter, Index 14 (95% over 22bp)
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	911	0.11952227824419018	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGACAAT	55	1.8189894E-12	45.000004	20
ATCACGC	30	2.1645355E-6	45.000004	42
CGTAGTG	30	2.1645355E-6	45.000004	28
GAAACGT	30	2.1645355E-6	45.000004	35
GCGATTG	55	1.8189894E-12	45.000004	1
AATTCGC	30	2.1645355E-6	45.000004	39
TTAACCG	30	2.1645355E-6	45.000004	1
CACGTTA	30	2.1645355E-6	45.000004	38
CACGTCG	30	2.1645355E-6	45.000004	36
TCGCCTA	20	7.03179E-4	45.0	14
CTTAACG	20	7.03179E-4	45.0	1
CTTCGAA	25	3.8895654E-5	45.0	40
TCGTTTA	35	1.2112105E-7	45.0	38
TCACCGA	25	3.8895654E-5	45.0	38
CGAGTAT	20	7.03179E-4	45.0	34
CATGCGT	35	1.2112105E-7	45.0	34
CGTGATA	50	2.1827873E-11	45.0	14
CGCATAG	20	7.03179E-4	45.0	1
GGTCCAA	45	3.8380676E-10	45.0	10
CACGCGA	20	7.03179E-4	45.0	11