SRR3553413_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553413_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	243790
Sequences flagged as poor quality	0
Sequence length	51
%GC	40

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	10037	4.1170679683334015	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2226	0.9130809303088725	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1987	0.8150457360843348	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1083	0.44423479223922224	No Hit
CTGTCTCTTATACACATCTGACGCTATCGCGATCGTATGCCGTCTTCTGCT	917	0.37614340210837194	Illumina Single End Adapter 1 (95% over 21bp)
AATGATACCTGTCTCTTATACACATCTGACGCTATCGCGATCGTATGCCGT	610	0.25021534927601624	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCTATCGCGATCGTATGCC	568	0.23298740719471678	No Hit
AATCTGTCTCTTATACACATCTGACGCTATCGCGATCGTATGCCGTCTTCT	483	0.198121333934944	No Hit
ATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCATA	370	0.15176996595430492	No Hit
TCATCAGGGGTTGAGCTTTTGTTTTTCTTCAGTGCTGGCAGGGGAGGGTGG	319	0.13085032199844127	No Hit
AGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	314	0.1287993765125723	No Hit
CACCCAGGGAATGATACCTGTCTCTTATACACATCTGACGCTATCGCGATC	271	0.11116124533409903	No Hit
CCACCAGGGATGTTTGGCCTTAAATTTTTTCTAGTGTTAGAAGCCCTTTTG	270	0.11075105623692522	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGGTAT	45	3.8198777E-10	45.000004	6
ACTGCGG	45	3.8198777E-10	45.000004	2
GTAGGGT	30	2.158442E-6	45.000004	4
AGAACCG	30	2.158442E-6	45.000004	1
CTAACGG	45	3.8198777E-10	45.000004	2
CGAATAT	65	0.0	45.000004	13
GCCTAGG	45	3.8198777E-10	45.000004	2
TTACCGG	30	2.158442E-6	45.000004	2
CGATAGG	45	3.8198777E-10	45.000004	2
CAGCGCG	20	7.0223416E-4	45.0	1
CTCACGG	35	1.206663E-7	45.0	2
CTCGTCC	55	1.8189894E-12	45.0	37
GCGCGGA	35	1.206663E-7	45.0	22
ATAATCG	25	3.881735E-5	45.0	24
CGGCAGC	20	7.0223416E-4	45.0	37
TAGCGAG	25	3.881735E-5	45.0	1
TCGGGTA	20	7.0223416E-4	45.0	5
CGACCTA	20	7.0223416E-4	45.0	33
TAAACCG	35	1.206663E-7	45.0	1
GCGCCAC	20	7.0223416E-4	45.0	18