SRR3553411_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553411_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	626290
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	9690	1.5472065656485017	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2094	0.33434990180267926	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1683	0.26872535087579236	No Hit
CTGTCTCTTATACACATCTGACGCGGTCTGAATCGTATGCCGTCTTCTGCT	1262	0.2015040955467914	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1001	0.15983011065161506	No Hit
ATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCATA	716	0.11432403519136501	No Hit
TCAGGCGGGATTATAGCAAGGCCTAGAAGAGATTTACAGACAATCCCAAAG	644	0.10282776349614395	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATAGCCG	65	0.0	45.000004	1
AACGTGC	20	7.030824E-4	45.0	24
CCTTAGG	50	2.1827873E-11	45.0	2
CTCCGTA	25	3.8887654E-5	45.0	41
CGAGTCG	20	7.030824E-4	45.0	38
TTAGCCG	40	6.8066583E-9	45.0	1
CGTGCAC	25	3.8887654E-5	45.0	39
CAGCCGA	20	7.030824E-4	45.0	40
CGTGATC	20	7.030824E-4	45.0	20
AGCCACG	25	3.8887654E-5	45.0	1
TCGATAC	25	3.8887654E-5	45.0	24
CGTTCCA	20	7.030824E-4	45.0	44
ACGATGT	20	7.030824E-4	45.0	21
AAGCCCG	20	7.030824E-4	45.0	1
CTAGTCG	20	7.030824E-4	45.0	3
CACTACG	40	6.8066583E-9	45.0	1
TACGAAT	100	0.0	45.0	11
ACGTGCC	20	7.030824E-4	45.0	25
ACTACGT	20	7.030824E-4	45.0	24
TCGTCGA	20	7.030824E-4	45.0	45