SRR3553410_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553410_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	538306
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	11502	2.136702916185218	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2940	0.5461577615705565	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2235	0.41519135956129044	No Hit
CTGTCTCTTATACACATCTGACGCGCTATCTGTCGTATGCCGTCTTCTGCT	1943	0.3609471192964597	TruSeq Adapter, Index 19 (95% over 22bp)
AATGATACCTGTCTCTTATACACATCTGACGCGCTATCTGTCGTATGCCGT	1715	0.3185920275828247	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCGCTATCTGTCGTATGCC	1531	0.28441072549813673	No Hit
AATCTGTCTCTTATACACATCTGACGCGCTATCTGTCGTATGCCGTCTTCT	1480	0.27493656024640256	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1285	0.23871181075447792	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	540	0.10031469090071446	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTAGGTC	30	2.1633423E-6	45.000004	13
TCGTTGC	30	2.1633423E-6	45.000004	23
TGCCCGA	20	7.029939E-4	45.000004	20
CGAACCC	20	7.029939E-4	45.000004	33
CTCGTAT	20	7.029939E-4	45.000004	42
CACGGTT	20	7.029939E-4	45.000004	26
CGACGTA	20	7.029939E-4	45.000004	30
TTTACGA	20	7.029939E-4	45.000004	17
CCCTATA	20	7.029939E-4	45.000004	28
CGTGCGA	20	7.029939E-4	45.000004	43
TAGAATC	20	7.029939E-4	45.000004	28
CATTGCG	30	2.1633423E-6	45.000004	1
CTATACG	30	2.1633423E-6	45.000004	1
AACCACG	20	7.029939E-4	45.000004	1
CCTACGT	30	2.1633423E-6	45.000004	29
ACGGGTA	175	0.0	45.000004	5
TCGATAG	20	7.029939E-4	45.000004	35
ATTCCGC	20	7.029939E-4	45.000004	23
GTTACCA	20	7.029939E-4	45.000004	13
TTCCCGC	30	2.1633423E-6	45.000004	45