SRR3553403_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553403_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	880519
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	17367	1.9723594834410159	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3608	0.40975833570882625	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3350	0.38045743476290683	No Hit
AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	2785	0.3162907330790136	No Hit
CTGTCTCTTATACACATCTGACGCTGTGTAGGTCGTATGCCGTCTTCTGCT	2284	0.2593924719398446	Illumina Single End Adapter 2 (95% over 22bp)
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1900	0.21578182867149942	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCTGTGTAGGTCGTATGCCGT	1385	0.15729359616317196	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCTGTGTAGGTCGTATGCC	1174	0.13333045624228437	No Hit
AATCTGTCTCTTATACACATCTGACGCTGTGTAGGTCGTATGCCGTCTTCT	1098	0.12469918309542441	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	920	0.10448383283041024	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	914	0.10380241652934236	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGCCTA	20	7.0323853E-4	45.000004	29
AACCGTA	20	7.0323853E-4	45.000004	10
CGAGTAG	35	1.2115015E-7	45.000004	1
TTAGCCA	20	7.0323853E-4	45.000004	29
CACGATT	20	7.0323853E-4	45.000004	41
CGCGATA	20	7.0323853E-4	45.000004	26
CGCGACG	75	0.0	45.000004	1
TAACGCG	20	7.0323853E-4	45.000004	1
CGCGAAA	20	7.0323853E-4	45.000004	14
GTTACGA	20	7.0323853E-4	45.000004	10
ACGATAT	35	1.2115015E-7	45.000004	23
CCACTAG	70	0.0	45.000004	1
CCGTAGA	20	7.0323853E-4	45.000004	16
CGGATTG	20	7.0323853E-4	45.000004	1
CGTAGCG	40	6.8121153E-9	45.000004	1
CGCTAAC	20	7.0323853E-4	45.000004	16
GTACTAG	20	7.0323853E-4	45.000004	1
ACTCGTA	20	7.0323853E-4	45.000004	37
GCGATAT	20	7.0323853E-4	45.000004	18
CCGACTC	20	7.0323853E-4	45.000004	13