SRR3553400_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553400_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	439406
Sequences flagged as poor quality	0
Sequence length	51
%GC	37

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	31164	7.092301880265631	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	6976	1.5875978024879043	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	5972	1.3591075224280051	No Hit
CTGTCTCTTATACACATCTGACGCGGAAATGGTCGTATGCCGTCTTCTGCT	3897	0.8868791049735324	Illumina Single End Adapter 2 (95% over 21bp)
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3403	0.7744546046253351	No Hit
TGCCATGGGAGCAAGAGAGGCAATTTTTTAGAGTTTCTTTTTATGAACTGT	875	0.1991324651916451	No Hit
AGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	853	0.19412570606682658	No Hit
AAACTGTCTCTTATACACATCTGACGCGGAAATGGTCGTATGCCGTCTTCT	834	0.18980168682266513	No Hit
AAAAACTGTCTCTTATACACATCTGACGCGGAAATGGTCGTATGCCGTCTT	719	0.16362999139747753	No Hit
GGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	607	0.13814103585294693	No Hit
CCTGTCTCTTATACACATCTGACGCGGAAATGGTCGTATGCCGTCTTCTGC	605	0.1376858759325089	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCGGAAATGGTCGTATGCCGT	567	0.129037837444186	No Hit
ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	551	0.12539655808068165	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCGGAAATGGTCGTATGCC	519	0.11811399935367291	No Hit
AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	515	0.11720367951279682	No Hit
AATCTGTCTCTTATACACATCTGACGCGGAAATGGTCGTATGCCGTCTTCT	488	0.1110590205868832	No Hit
TGATTACGGGAACAAAACAAAACAAAACGAAAGACAAAAAGACAAAACAAA	463	0.10536952158140764	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCACGCT	25	3.8868584E-5	45.000004	43
TCCATAC	30	2.1624292E-6	45.000004	23
GCCCACA	25	3.8868584E-5	45.000004	18
GCGACTT	30	2.1624292E-6	45.000004	32
TCCGCTC	25	3.8868584E-5	45.000004	44
TCCGCGT	25	3.8868584E-5	45.000004	37
GCGACCG	25	3.8868584E-5	45.000004	32
GATCGCT	25	3.8868584E-5	45.000004	9
GTCGAAG	30	2.1624292E-6	45.000004	17
GGTCGAA	30	2.1624292E-6	45.000004	16
AGATACG	25	3.8868584E-5	45.000004	1
CGAAACG	25	3.8868584E-5	45.000004	1
GAGTCGT	25	3.8868584E-5	45.000004	8
ACGCAGC	30	2.1624292E-6	45.000004	13
TCCGAAT	25	3.8868584E-5	45.000004	27
ACCGCGC	25	3.8868584E-5	45.000004	35
CGGCAGG	50	2.1827873E-11	45.000004	2
TTCACGC	25	3.8868584E-5	45.000004	42
CACGCGT	25	3.8868584E-5	45.000004	11
TAAACCG	30	2.1624292E-6	45.000004	1