SRR3553399_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553399_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	432679
Sequences flagged as poor quality	0
Sequence length	51
%GC	37

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	30799	7.118210035615317	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	6763	1.563052516992967	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	6073	1.4035809456895296	No Hit
CTGTCTCTTATACACATCTGACGCGGAAATGGTCGTATGCCGTCTTCTGCT	3593	0.8304077618742763	Illumina Single End Adapter 2 (95% over 21bp)
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3271	0.7559876952660055	No Hit
TGCCATGGGAGCAAGAGAGGCAATTTTTTAGAGTTTCTTTTTATGAACTGT	863	0.19945502323893693	No Hit
AGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	843	0.19483265885333007	No Hit
AAACTGTCTCTTATACACATCTGACGCGGAAATGGTCGTATGCCGTCTTCT	759	0.17541872843378117	No Hit
AAAAACTGTCTCTTATACACATCTGACGCGGAAATGGTCGTATGCCGTCTT	752	0.17380090089881875	No Hit
GGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	633	0.1462978328044578	No Hit
CCTGTCTCTTATACACATCTGACGCGGAAATGGTCGTATGCCGTCTTCTGC	545	0.12595942950778752	No Hit
ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	542	0.1252660748499465	No Hit
AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	517	0.1194881193679379	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCGGAAATGGTCGTATGCCGT	513	0.11856364649081652	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCGGAAATGGTCGTATGCC	480	0.11093674525456515	No Hit
AATCTGTCTCTTATACACATCTGACGCGGAAATGGTCGTATGCCGTCTTCT	473	0.10931891771960274	No Hit
TGATTACGGGAACAAAACAAAACAAAACGAAAGACAAAAAGACAAAACAAA	470	0.10862556306176173	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGTTTC	20	7.0284033E-4	45.000004	20
GTCGCTC	40	6.7975634E-9	45.000004	33
TCGTTAA	20	7.0284033E-4	45.000004	16
CGAACAG	30	2.1623528E-6	45.000004	1
CTCGTCG	40	6.7975634E-9	45.000004	37
ATCTACG	20	7.0284033E-4	45.000004	1
CGTGCTT	40	6.7975634E-9	45.000004	45
CGAAACG	20	7.0284033E-4	45.000004	1
ACGTTAG	20	7.0284033E-4	45.000004	1
TAGACAG	20	7.0284033E-4	45.000004	1
ACGCAAC	20	7.0284033E-4	45.000004	37
TGGCGCT	20	7.0284033E-4	45.000004	15
TCTTACG	20	7.0284033E-4	45.000004	1
CGCGCAG	40	6.7975634E-9	45.000004	1
TTCGTTA	20	7.0284033E-4	45.000004	15
GTTAGCG	20	7.0284033E-4	45.000004	1
TTTCCGG	20	7.0284033E-4	45.000004	2
ACGGGCG	20	7.0284033E-4	45.000004	5
GCACCGT	20	7.0284033E-4	45.000004	24
CTGCGAC	40	6.7975634E-9	45.000004	30