SRR3553397_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553397_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	797097
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	22396	2.80969568321045	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	4841	0.6073288445446414	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	4215	0.5287938607220953	No Hit
CTGTCTCTTATACACATCTGACGCGCTCCTATTCGTATGCCGTCTTCTGCT	3610	0.45289343705973045	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2447	0.30698898628397797	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCGCTCCTATTCGTATGCCGT	1702	0.2135248282204048	No Hit
AATCTGTCTCTTATACACATCTGACGCGCTCCTATTCGTATGCCGTCTTCT	1279	0.16045725927961088	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCGCTCCTATTCGTATGCC	1184	0.14853901093593377	No Hit
TGCACTGGGGAAAACCTGTTCTGTGCTGGTTTATTTTCTGGATTTGTTTTC	1045	0.1311007317804483	No Hit
AAACTGTCTCTTATACACATCTGACGCGCTCCTATTCGTATGCCGTCTTCT	1027	0.1288425373574358	No Hit
GTACATGGGGAGTCAGACAAATCATCGTCCTGAATGCTTCATTTAAATATA	991	0.12432614851141079	No Hit
AAAAACTGTCTCTTATACACATCTGACGCGCTCCTATTCGTATGCCGTCTT	863	0.10826787705887742	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CACGTAG	55	1.8189894E-12	45.000004	1
CGATAGG	115	0.0	45.000004	2
TACGTTG	55	1.8189894E-12	45.000004	1
TAATCCG	55	1.8189894E-12	45.000004	1
CGGGTTA	40	6.8102963E-9	45.0	6
CGGCGTA	20	7.0319837E-4	45.0	22
AGCGTAA	35	1.2113014E-7	45.0	32
GTACCGT	25	3.8897255E-5	45.0	13
CGAACAT	20	7.0319837E-4	45.0	23
ACGCCTA	25	3.8897255E-5	45.0	32
ATTAGGT	25	3.8897255E-5	45.0	44
GTATTCG	20	7.0319837E-4	45.0	9
ACGTTTC	20	7.0319837E-4	45.0	39
ACGTTCC	20	7.0319837E-4	45.0	19
CGTGCGT	25	3.8897255E-5	45.0	23
TAGCGTA	35	1.2113014E-7	45.0	31
CGCATCT	25	3.8897255E-5	45.0	42
TGTGGCG	25	3.8897255E-5	45.0	17
CGCATAC	20	7.0319837E-4	45.0	30
CTCCCGT	20	7.0319837E-4	45.0	23