SRR3553394_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553394_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1029309
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	19851	1.928575384068341	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	4512	0.438352331515609	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3521	0.3420741487735947	No Hit
CTGTCTCTTATACACATCTGACGCGTACGAAGTCGTATGCCGTCTTCTGCT	3242	0.3149685857211003	No Hit
AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	2759	0.2680439012968895	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2136	0.2075178590685596	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1974	0.19177914503807894	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	1420	0.13795662915606488	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1030	0.1000671324160189	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TAACGTT	35	1.2117562E-7	45.000004	41
AACGGTT	65	0.0	45.000004	7
CGTTACG	35	1.2117562E-7	45.000004	1
ACGATAG	70	0.0	45.000004	1
ATATCCC	35	1.2117562E-7	45.000004	15
GGTGCGT	35	1.2117562E-7	45.000004	40
ACGTCAT	35	1.2117562E-7	45.000004	32
CACGTTA	35	1.2117562E-7	45.000004	16
CGACTCG	35	1.2117562E-7	45.000004	16
GCTCGAA	35	1.2117562E-7	45.000004	29
TCGCAAC	20	7.0329447E-4	45.0	16
CGTATAG	40	6.8139343E-9	45.0	1
CGACGGT	20	7.0329447E-4	45.0	28
CGAAAAC	50	2.1827873E-11	45.0	11
CGACGCA	20	7.0329447E-4	45.0	39
CTATCGA	20	7.0329447E-4	45.0	34
ACCGCCG	20	7.0329447E-4	45.0	44
CGCATTT	80	0.0	45.0	23
ACATTCG	20	7.0329447E-4	45.0	10
TGAACGT	20	7.0329447E-4	45.0	9