SRR3553393_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553393_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1020836
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	20068	1.9658397627042932	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	4493	0.440129462518955	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3564	0.34912561861062896	No Hit
CTGTCTCTTATACACATCTGACGCGTACGAAGTCGTATGCCGTCTTCTGCT	2949	0.2888808780254615	No Hit
AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	2887	0.28280742450305435	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	2078	0.20355865192841943	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2051	0.20091376087833895	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	1411	0.1382200470986525	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGCGTAA	20	7.032914E-4	45.000004	18
GATACCC	30	2.1652613E-6	45.000004	27
TCGCAAC	30	2.1652613E-6	45.000004	16
GCGACGA	20	7.032914E-4	45.000004	41
TAGACTA	40	6.8139343E-9	45.000004	41
CGACGAT	20	7.032914E-4	45.000004	16
TCCGAAC	20	7.032914E-4	45.000004	25
CGCATTG	20	7.032914E-4	45.000004	1
TTTCGCA	30	2.1652613E-6	45.000004	14
TAGCGTA	20	7.032914E-4	45.000004	17
TAGAACG	40	6.8139343E-9	45.000004	1
ATTACGC	20	7.032914E-4	45.000004	29
CGCGCGT	20	7.032914E-4	45.000004	22
CGTCTAG	20	7.032914E-4	45.000004	1
TCGATAC	20	7.032914E-4	45.000004	31
ACGATAG	60	0.0	45.000004	1
ATATCCC	20	7.032914E-4	45.000004	15
TACGCCC	20	7.032914E-4	45.000004	31
TCGTGCG	20	7.032914E-4	45.000004	45
GCCGAAC	40	6.8139343E-9	45.000004	23