SRR3553392_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553392_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1093587
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AATGATACCTGTCTCTTATACACATCTGACGCGGTATCTGTCGTATGCCGT	18179	1.662327734327493	No Hit
AATCTGTCTCTTATACACATCTGACGCGGTATCTGTCGTATGCCGTCTTCT	17422	1.5931059897383564	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCGGTATCTGTCGTATGCC	17181	1.5710684197965046	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	7975	0.7292515364575475	No Hit
AATGACTGTCTCTTATACACATCTGACGCGGTATCTGTCGTATGCCGTCTT	5184	0.4740363592471381	No Hit
CTGTCTCTTATACACATCTGACGCGGTATCTGTCGTATGCCGTCTTCTGCT	5137	0.4697385758974823	TruSeq Adapter, Index 16 (95% over 22bp)
AATGATCTGTCTCTTATACACATCTGACGCGGTATCTGTCGTATGCCGTCT	3788	0.34638304954246896	No Hit
AACTGTCTCTTATACACATCTGACGCGGTATCTGTCGTATGCCGTCTTCTG	3092	0.28273927908799207	No Hit
AATGATACGGCGACTGTCTCTTATACACATCTGACGCGGTATCTGTCGTAT	2694	0.24634528391431135	No Hit
AATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGGTATCTGTC	2216	0.20263591282632293	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1792	0.16386442048049218	No Hit
AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	1675	0.1531656832058172	No Hit
AATGCTGTCTCTTATACACATCTGACGCGGTATCTGTCGTATGCCGTCTTC	1629	0.14895934205509026	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1507	0.13780339378577103	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTGATCG	20	7.033137E-4	45.0	20
TAATACG	35	1.2118471E-7	45.0	1
CTCGTCG	40	6.8139343E-9	45.0	30
AAGCGTA	20	7.033137E-4	45.0	22
CGTTCGA	20	7.033137E-4	45.0	44
CCGCTAA	20	7.033137E-4	45.0	35
TCTAGCG	40	6.8139343E-9	45.0	1
ATCGTAG	25	3.8906815E-5	45.0	1
ATATCGT	40	6.8139343E-9	45.0	13
CGTAGCG	25	3.8906815E-5	45.0	1
AACGAAT	20	7.033137E-4	45.0	24
CGTACAT	25	3.8906815E-5	45.0	35
TTAGTCG	35	1.2118471E-7	45.0	1
TTACGTA	20	7.033137E-4	45.0	24
CATAACG	35	1.2118471E-7	45.0	1
TATAGCG	20	7.033137E-4	45.0	1
TACTACG	20	7.033137E-4	45.0	1
ATCGGCC	25	3.8906815E-5	45.0	4
GATTCGA	25	3.8906815E-5	45.0	9
CGTTTAG	35	1.2118471E-7	45.0	1