SRR3553388_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553388_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1201155
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	13662	1.13740524744933	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3309	0.27548484583588295	No Hit
CTGTCTCTTATACACATCTGACGCCAACCGATTCGTATGCCGTCTTCTGCT	2911	0.2423500713896208	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2521	0.209881322560369	No Hit
AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	2164	0.1801599294012846	No Hit
ACCCCAGGGAATGATACCTGTCTCTTATACACATCTGACGCCAACCGATTC	1661	0.13828356873176234	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1583	0.131789818965912	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCCAACCGATTCGTATGCCGT	1227	0.10215167900895387	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTATAG	30	2.1655833E-6	45.000004	1
CGAAACG	45	3.8562575E-10	45.000004	1
CCTACGC	30	2.1655833E-6	45.000004	19
CGACATT	30	2.1655833E-6	45.000004	32
TATGCGA	45	3.8562575E-10	45.000004	45
CGTAGCA	30	2.1655833E-6	45.000004	16
CGTAGAA	30	2.1655833E-6	45.000004	21
TCTAACG	45	3.8562575E-10	45.000004	1
CCGCACG	45	3.8562575E-10	45.000004	1
CGAAGTT	30	2.1655833E-6	45.000004	25
ACGCGAT	80	0.0	45.0	22
TCACGCG	20	7.0334144E-4	45.0	1
CGAACTA	25	3.8909107E-5	45.0	26
GCGACGT	20	7.0334144E-4	45.0	37
GTCGAGT	20	7.0334144E-4	45.0	13
CGACGTC	20	7.0334144E-4	45.0	38
TTTACGC	25	3.8909107E-5	45.0	33
CGACGCT	25	3.8909107E-5	45.0	18
CGTTGCA	20	7.0334144E-4	45.0	19
TTATGCG	20	7.0334144E-4	45.0	1