SRR3553387_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553387_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1193521
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	13656	1.1441776055888417	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3425	0.2869660441667972	No Hit
CTGTCTCTTATACACATCTGACGCCAACCGATTCGTATGCCGTCTTCTGCT	2810	0.23543783477626284	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2515	0.21072105141007155	No Hit
AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	2089	0.1750283405151648	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1601	0.13414091582804158	No Hit
ACCCCAGGGAATGATACCTGTCTCTTATACACATCTGACGCCAACCGATTC	1588	0.13305170164580263	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTGTCGT	35	1.2119744E-7	45.000004	20
ATTCGCG	70	0.0	45.000004	1
GTATCGG	85	0.0	45.000004	2
CGCGTAG	35	1.2119744E-7	45.000004	1
TCGTTGC	25	3.8908966E-5	45.0	14
GTCGACT	20	7.033395E-4	45.0	17
ACGTTAC	25	3.8908966E-5	45.0	29
CTATCGA	20	7.033395E-4	45.0	1
CGCATTA	20	7.033395E-4	45.0	38
TTTCGAC	25	3.8908966E-5	45.0	13
ATTACGA	25	3.8908966E-5	45.0	24
ATATCCG	50	2.1827873E-11	45.0	1
CGTAGCG	50	2.1827873E-11	45.0	1
GTATCGC	20	7.033395E-4	45.0	42
CGTGTAT	20	7.033395E-4	45.0	30
TAGATCG	45	3.8562575E-10	45.0	1
ACCGTAA	25	3.8908966E-5	45.0	18
CACGTTA	25	3.8908966E-5	45.0	28
TCGACGC	40	6.8157533E-9	45.0	17
CGTTTAG	55	1.8189894E-12	45.0	29